View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16124_high_37 (Length: 278)

Name: NF16124_high_37
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16124_high_37
NF16124_high_37
[»] chr2 (20 HSPs)
chr2 (18-278)||(29833037-29833298)
chr2 (32-278)||(31002226-31002467)
chr2 (32-278)||(31008204-31008445)
chr2 (32-278)||(36750264-36750505)
chr2 (41-278)||(28683014-28683246)
chr2 (32-122)||(30965177-30965267)
chr2 (32-278)||(35090718-35090962)
chr2 (32-271)||(13455949-13456183)
chr2 (32-271)||(13461890-13462124)
chr2 (32-124)||(35084897-35084989)
chr2 (32-278)||(44716874-44717115)
chr2 (41-123)||(23343412-23343494)
chr2 (41-123)||(35438924-35439006)
chr2 (64-278)||(13149755-13149962)
chr2 (42-111)||(11048782-11048851)
chr2 (32-120)||(19879448-19879536)
chr2 (202-271)||(35084752-35084823)
chr2 (195-253)||(28765586-28765645)
chr2 (236-278)||(30965376-30965418)
chr2 (171-220)||(31651612-31651662)
[»] chr7 (24 HSPs)
chr7 (51-229)||(3677893-3678070)
chr7 (41-278)||(5849388-5849615)
chr7 (64-278)||(43539861-43540075)
chr7 (41-278)||(28421028-28421260)
chr7 (41-278)||(3811238-3811470)
chr7 (41-278)||(3817380-3817612)
chr7 (32-278)||(351637-351876)
chr7 (32-278)||(20238800-20239041)
chr7 (32-122)||(5979394-5979484)
chr7 (41-122)||(15843805-15843886)
chr7 (41-122)||(15860914-15860995)
chr7 (168-278)||(26383603-26383716)
chr7 (198-278)||(22741994-22742074)
chr7 (41-145)||(35150738-35150842)
chr7 (32-122)||(339230-339319)
chr7 (41-145)||(35148206-35148310)
chr7 (202-278)||(339383-339461)
chr7 (41-221)||(26380942-26381109)
chr7 (31-123)||(18656872-18656963)
chr7 (39-123)||(22742148-22742232)
chr7 (202-278)||(35148073-35148152)
chr7 (205-235)||(24691085-24691115)
chr7 (202-278)||(42767364-42767442)
chr7 (168-278)||(30219315-30219428)
[»] chr6 (19 HSPs)
chr6 (32-278)||(25354061-25354301)
chr6 (32-278)||(8650872-8651113)
chr6 (32-278)||(4580390-4580631)
chr6 (32-278)||(25343474-25343714)
chr6 (16-221)||(17581462-17581666)
chr6 (41-145)||(31756417-31756521)
chr6 (29-123)||(21197249-21197343)
chr6 (171-278)||(21197090-21197198)
chr6 (171-278)||(21783378-21783486)
chr6 (171-278)||(21789601-21789709)
chr6 (32-123)||(21770786-21770875)
chr6 (171-278)||(21770627-21770735)
chr6 (168-278)||(21782822-21782935)
chr6 (32-278)||(21190935-21191179)
chr6 (202-278)||(32035355-32035433)
chr6 (208-278)||(8662850-8662922)
chr6 (79-146)||(13007597-13007664)
chr6 (202-278)||(18778595-18778673)
chr6 (206-268)||(1106229-1106294)
[»] chr5 (23 HSPs)
chr5 (41-278)||(30772140-30772373)
chr5 (41-278)||(12686248-12686480)
chr5 (41-278)||(12692350-12692582)
chr5 (32-278)||(7389617-7389857)
chr5 (32-122)||(32094441-32094531)
chr5 (66-278)||(26509731-26509940)
chr5 (32-278)||(41297129-41297367)
chr5 (168-247)||(33848989-33849069)
chr5 (41-123)||(19066331-19066413)
chr5 (168-241)||(33753361-33753435)
chr5 (32-108)||(20499988-20500064)
chr5 (169-278)||(32094229-32094340)
chr5 (43-122)||(32097242-32097321)
chr5 (155-230)||(26318372-26318448)
chr5 (41-124)||(14610027-14610110)
chr5 (41-278)||(28525455-28525687)
chr5 (64-123)||(19059990-19060049)
chr5 (41-278)||(28531551-28531783)
chr5 (51-221)||(30384505-30384677)
chr5 (205-278)||(32097030-32097104)
chr5 (202-278)||(24054346-24054425)
chr5 (168-278)||(20500115-20500228)
chr5 (234-278)||(37896367-37896411)
[»] chr4 (24 HSPs)
chr4 (131-256)||(31986742-31986869)
chr4 (32-278)||(48160809-48161049)
chr4 (32-278)||(48167028-48167268)
chr4 (16-278)||(44831681-44831947)
chr4 (32-278)||(6257274-6257515)
chr4 (41-278)||(10739408-10739640)
chr4 (41-278)||(10953177-10953409)
chr4 (32-278)||(33458336-33458576)
chr4 (32-278)||(24287836-24288077)
chr4 (77-278)||(3769464-3769657)
chr4 (41-278)||(33461462-33461693)
chr4 (171-278)||(4632372-4632481)
chr4 (67-123)||(45236487-45236543)
chr4 (41-271)||(49976445-49976670)
chr4 (32-123)||(26957022-26957113)
chr4 (41-122)||(10733572-10733653)
chr4 (41-122)||(10947341-10947422)
chr4 (171-278)||(26963410-26963518)
chr4 (64-145)||(35177678-35177759)
chr4 (202-278)||(10733315-10733393)
chr4 (202-278)||(10947084-10947162)
chr4 (39-278)||(50168451-50168683)
chr4 (64-122)||(4632263-4632321)
chr4 (51-112)||(17627010-17627071)
[»] chr3 (27 HSPs)
chr3 (32-278)||(10244403-10244644)
chr3 (32-278)||(11839794-11840035)
chr3 (32-278)||(38455619-38455860)
chr3 (32-278)||(10238281-10238522)
chr3 (32-278)||(10760719-10760960)
chr3 (32-278)||(38449132-38449373)
chr3 (41-278)||(8331645-8331877)
chr3 (32-145)||(10769168-10769279)
chr3 (41-278)||(17055862-17056094)
chr3 (32-271)||(42191296-42191530)
chr3 (32-271)||(42197238-42197472)
chr3 (163-274)||(46656656-46656770)
chr3 (45-271)||(13444920-13445144)
chr3 (32-120)||(26429639-26429727)
chr3 (43-122)||(13837534-13837613)
chr3 (41-278)||(49151470-49151702)
chr3 (41-278)||(49157537-49157769)
chr3 (168-278)||(11846132-11846245)
chr3 (202-278)||(28964881-28964958)
chr3 (202-278)||(10766940-10767018)
chr3 (202-278)||(17593351-17593429)
chr3 (41-278)||(30051171-30051403)
chr3 (171-278)||(34300477-34300587)
chr3 (68-253)||(12108762-12108945)
chr3 (89-145)||(53069256-53069312)
chr3 (32-145)||(55003611-55003718)
chr3 (87-122)||(28964776-28964811)
[»] chr1 (14 HSPs)
chr1 (51-268)||(38152048-38152255)
chr1 (32-278)||(25387573-25387814)
chr1 (31-278)||(44409849-44410100)
chr1 (32-278)||(25381604-25381845)
chr1 (32-278)||(31051394-31051634)
chr1 (32-278)||(34739836-34740076)
chr1 (32-278)||(31057894-31058134)
chr1 (32-122)||(1078094-1078184)
chr1 (41-123)||(8093065-8093147)
chr1 (89-278)||(50306096-50306279)
chr1 (40-123)||(24926980-24927063)
chr1 (205-278)||(12183653-12183727)
chr1 (41-108)||(24963943-24964010)
chr1 (202-278)||(1078236-1078314)
[»] chr8 (20 HSPs)
chr8 (32-278)||(5542229-5542470)
chr8 (32-278)||(32896862-32897103)
chr8 (32-278)||(32890738-32890979)
chr8 (32-278)||(10699879-10700119)
chr8 (32-278)||(39735621-39735858)
chr8 (51-278)||(42993073-42993294)
chr8 (41-271)||(36818830-36819054)
chr8 (32-271)||(10705687-10705920)
chr8 (41-123)||(42033659-42033741)
chr8 (41-278)||(14417799-14418031)
chr8 (32-124)||(39727526-39727618)
chr8 (171-278)||(22219786-22219897)
chr8 (202-278)||(14799485-14799562)
chr8 (32-122)||(22219947-22220037)
chr8 (204-253)||(1171361-1171410)
chr8 (41-123)||(1883038-1883120)
chr8 (46-121)||(9935142-9935217)
chr8 (202-271)||(9935291-9935362)
chr8 (168-278)||(7771210-7771322)
chr8 (89-146)||(1171252-1171308)
[»] scaffold0085 (1 HSPs)
scaffold0085 (163-278)||(38402-38518)
[»] scaffold0208 (2 HSPs)
scaffold0208 (32-278)||(6372-6613)
scaffold0208 (32-278)||(12245-12486)
[»] scaffold0440 (1 HSPs)
scaffold0440 (41-278)||(1263-1495)
[»] scaffold0363 (1 HSPs)
scaffold0363 (41-278)||(688-920)
[»] scaffold0185 (2 HSPs)
scaffold0185 (63-133)||(5825-5895)
scaffold0185 (211-278)||(5945-6013)
[»] scaffold0236 (1 HSPs)
scaffold0236 (168-278)||(5512-5625)
[»] scaffold0012 (1 HSPs)
scaffold0012 (41-122)||(173110-173191)
[»] scaffold1114 (1 HSPs)
scaffold1114 (51-124)||(952-1025)
[»] scaffold1064 (1 HSPs)
scaffold1064 (64-144)||(1255-1334)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 29833037 - 29833298
Alignment:
Q  18 gctatggtccccaatacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaatt-agctgcc 116  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||    
T  29833037 gctatggtccccaatacacgacaaaactctatattctctctgtctgaagagaacttgaaggataaatgtatcggttgaggaagaaccaaatttagccgcc 29833136  T
Q  117 gctaacccgatgttgtgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaacttcatccaggtattccta 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29833137 gctaacccgatgttgtgtatttcggatcacggtttctcctctctgattcagatcgttgttgttgagagggttgtcatcaaacttcatccaggtattctta 29833236  T
Q  217 atacctaattattgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833237 atacctaattattgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 29833298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 31002226 - 31002467
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    ||||| |||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||||||  ||||||||| |  | |||    
T  31002226 tacacaacaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaattagtcgccgctaactc--tattg 31002323  T
Q  132 tgtatttcagatcacggtttctcctc--tctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||  | || ||   |||||||||| |||||||| ||  |  ||| ||| || ||||||||||||||| |||||||     
T  31002324 tgtgtttcagatca-----tctcctctttttggtt---atcgttgttgatgagagggctgctacaaaagctttattcaggtattcctaataccctaattc 31002415  T
Q  228 ttgtta-tcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||| || |||||||||||||||||||| || |||||||||||||| ||||||    
T  31002416 ttgatattcttgataaatcaaacatgtcgtagatccgatcataatcatgttc 31002467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 31008204 - 31008445
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    ||||| |||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||||||  ||||||||| |  | |||    
T  31008204 tacacaacaatactctctcttctccccatctgaagagaacttgaggcataaaagtaccggttgaggaagaaccaaattagtcgccgctaactc--tattg 31008301  T
Q  132 tgtatttcagatcacggtttctcctc--tctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||  | || ||   |||||||||| |||||||| ||  |  ||| ||| || ||||||||||||||| |||||||     
T  31008302 tgtgtttcagatca-----tctcctctttttggtt---atcgttgttgatgagagggctgctacaaaagctttattcaggtattcctaataccctaattc 31008393  T
Q  228 ttgtta-tcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||| || |||||||||||||||||||| || |||||||||||||| ||||||    
T  31008394 ttgatattcttgataaatcaaacatgtcgtagatccgatcataatcatgttc 31008445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 36750264 - 36750505
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||||||| ||||||| ||||| || ||| |||||||||||| |||||||  || |||||||||||||||||||| ||| ||||||||| |  | |||    
T  36750264 tacacgacaatactctctcttctccccatctgaagagaacttgaggcataaagataccggttgaggaagaaccaaatcagccgccgctaactc--tattg 36750361  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| | |||||| ||  || |||  || |||||||||||||||||| |||||||     
T  36750362 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgattagagggctgctatgaaagttttatccaggtattcctaataccctaattc 36750453  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  36750454 ttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 36750505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 28683246 - 28683014
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| || | |||| | ||  ||||| |||||    
T  28683246 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgctgttaactctat--tgtgtgtttca 28683149  T
Q  141 gatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatc-tt 237  Q
    |||||     ||||||   || ||   |||||||||| ||||||||||||| | ||| ||| |||||||||||||||||||| ||||| ||  || | ||    
T  28683148 gatcatccactctcct---tggtt---atcgttgttgatgagagggttgtcttgaaagctttatccaggtattcctaataccctaattcttaataacctt 28683055  T
Q  238 gataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| || |||||||||||||| ||||||    
T  28683054 gataaatcaaacatgtcgtagatccgatcataatcatgttc 28683014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 30965177 - 30965267
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    |||||||||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||||||  |||||||||    
T  30965177 tacacgacaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaattagtcgccgctaac 30965267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 35090962 - 35090718
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccga----- 126  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||| |         
T  35090962 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaaccctatttat 35090863  T
Q  127 -tgttgtgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatac-cta 223  Q
     | |||| | ||||||||||        |||||||| ||   || |||| || |||||||| || ||| ||| ||| ||||||||||||||||||| |||    
T  35090862 ttattgtttgtttcagatca--------cctctctgttt---attgttgatgctgagagggctgccatgaaagctttatccaggtattcctaatacacta 35090774  T
Q  224 attattgtta-tcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||| ||  || |||||||||||||||||||| || |||||||||||||| ||||||    
T  35090773 attgttaatattcttgataaatcaaacatgtcgtagatccgatcataatcatgttc 35090718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 271
Target Start/End: Original strand, 13455949 - 13456183
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| |||  |||||||| |  | |||    
T  13455949 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccaccgctaactc--tattg 13456046  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   || ||||||| |||||||| || | | ||| ||| |||||||||||||||||| |||||||     
T  13456047 tgtgtttcagatca-----tctcctctctttggtt---atagttgttgatgagagggctgccttgaaagctttatccaggtattcctaataccctaattc 13456138  T
Q  228 ttgtta-tcttgataaatcaaacatgttgtcgatccgatcataat 271  Q
    ||  ||  ||||||||||||||||||| || ||||||||||||||    
T  13456139 ttaatacccttgataaatcaaacatgtcgtagatccgatcataat 13456183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 271
Target Start/End: Original strand, 13461890 - 13462124
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| |||  |||||||| |  | |||    
T  13461890 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccaccgctaactc--tattg 13461987  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   || ||||||| |||||||| || | | ||| ||| |||||||||||||||||| |||||||     
T  13461988 tgtgtttcagatca-----tctcctctctttggtt---atagttgttgatgagagggctgccttgaaagctttatccaggtattcctaataccctaattc 13462079  T
Q  228 ttgtta-tcttgataaatcaaacatgttgtcgatccgatcataat 271  Q
    ||  ||  ||||||||||||||||||| || ||||||||||||||    
T  13462080 ttaatacccttgataaatcaaacatgtcgtagatccgatcataat 13462124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 35084989 - 35084897
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaaccc 124  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| |||||||||||    
T  35084989 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaaccc 35084897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 44717115 - 44716874
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||| ||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  44717115 tacacggcaatactatctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 44717018  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||| | ||  |  ||| ||| |||||||||||||||||| |||||||     
T  44717017 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagagctgctacaaaagctttatccaggtattcctaataccctaattc 44716926  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| |||| |||||||||||||| || |||||||||||||| ||||||    
T  44716925 ttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttc 44716874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 23343412 - 23343494
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| |||||||||||||||||||||||| ||| || |||||||    
T  23343412 aaactctctcttctccccatctgaagagaacttgaggcataaaggtatcggttgaggaagaaccaaatcagccgctgctaacc 23343494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 35439006 - 35438924
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  35439006 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaacc 35438924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 278
Target Start/End: Complemental strand, 13149962 - 13149755
Alignment:
Q  64 aagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtttctcctctctgat 163  Q
    |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| | ||  ||||| ||||||||||     ||||||||||       
T  13149962 aagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactctat--tgtgtgtttcagatca-----tctcctctct--- 13149873  T
Q  164 ttag--atcgttgttgttgagagggttgtcatcaaacttcatccaggtattcctaatacc-taattattgttatcttgataaatcaaacatgttgtcgat 260  Q
    || |  |||||||||| |||||||| ||  |  ||| ||    ||||||||| ||||||| ||||| ||  |||||||||||||||||||||| || |||    
T  13149872 ttggttatcgttgttgatgagagggctgctacaaaagttttatcaggtattcttaataccctaattcttaatatcttgataaatcaaacatgtcgtagat 13149773  T
Q  261 ccgatcataattatgttc 278  Q
    ||||||||||| ||||||    
T  13149772 ccgatcataatcatgttc 13149755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 11048851 - 11048782
Alignment:
Q  42 aactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattag 111  Q
    |||||||| ||||| || ||| |||||||||||| ||||||| ||| | |||||||||||||||||||||    
T  11048851 aactctctcttctccccatctgaagagaacttgaggcataaaggtaccagttgaggaagaaccaaattag 11048782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 19879448 - 19879536
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgcta 120  Q
    |||||| ||||||||||| ||||| || ||| |||||||||||| ||||||| ||| || |||| |||||| ||||| ||| |||||||    
T  19879448 tacacggcaaaactctctcttctccccatctgaagagaacttgaggcataaaggtaccgattgaagaagaatcaaatcagccgccgcta 19879536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 35084823 - 35084752
Alignment:
Q  202 atccaggtattcctaatac-ctaattattgttat-cttgataaatcaaacatgttgtcgatccgatcataat 271  Q
    ||||||||||||||||||| |||||| ||  ||| ||||||||||||||||||| || ||||||||||||||    
T  35084823 atccaggtattcctaatacactaattgttaatattcttgataaatcaaacatgtcgtagatccgatcataat 35084752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 28765586 - 28765645
Alignment:
Q  195 aaacttcatccaggtattcctaatacctaattattg-ttatcttgataaatcaaacatgt 253  Q
    |||| ||||||||||||||||||||  ||||||||| || ||||| ||||||||||||||    
T  28765586 aaacatcatccaggtattcctaatagttaattattgtttttcttgttaaatcaaacatgt 28765645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 30965376 - 30965418
Alignment:
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  30965376 ttgataaatcaaacatgtcgtagatccgatcataatcatgttc 30965418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 31651612 - 31651662
Alignment:
Q  171 gttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatac 220  Q
    |||||||||||||||||||| |||||| |||||||||  ||||||||||||    
T  31651612 gttgttgttgagagggttgttatcaaagcttcatccaactattcctaatac 31651662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 3677893 - 3678070
Alignment:
Q  51 ttctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtt 150  Q
    |||||||| ||| ||||||| |||| ||||||| |||||||||||||||||| ||||| | |||||| ||||   |||| |||||||||| ||||| |||    
T  3677893 ttctctccatctgaagagaaattgaggcataaaagtatcggttgaggaagaaacaaatcaactgccggtaact--atgtcgtgtatttcaaatcacagtt 3677990  T
Q  151 tctcctctctgatttagatcgttgttgttgagagggttgtcatc-aaacttcatccaggtattcctaatacctaattatt 229  Q
    ||||||||||||||||||||| || |||||||||| ||| |||| ||||||||||| | |||||||||||||||||||||    
T  3677991 tctcctctctgatttagatcgctgctgttgagaggattgccatcaaaacttcatcctgatattcctaatacctaattatt 3678070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 5849388 - 5849615
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||| ||||||| ||||||| ||| |||||||||||||||||||| ||  |||||||||   |||||||||||||||    
T  5849388 aaactctcttttctccccatctgaagataacttgaggcataaaggtaccggttgaggaagaaccaaatcagacgccgctaacat-atgttgtgtatttca 5849486  T
Q  141 gatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttatc-tt 237  Q
    |||||  ||||||||            ||||||||||||||||| | |||||| ||| |||||||||||||||||||||| ||||||| ||| |||| ||    
T  5849487 gatcatagtttctcc------------atcgttgttgttgagagagctgtcattaaagcttcatccaggtattcctaatatcctaattcttgatatcctt 5849574  T
Q  238 gataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| || |||||| ||||| ||||||||    
T  5849575 gataaatcaaacatgtcgtagatccgttcatatttatgttc 5849615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 64 - 278
Target Start/End: Original strand, 43539861 - 43540075
Alignment:
Q  64 aagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtttctcctctctgat 163  Q
    |||||||||| | ||||||| |||  ||||||||||||||||||| ||  ||||||||||  || |||||| ||||||||||     ||  |||| || |    
T  43539861 aagagaactttaggcataaaggtactggttgaggaagaaccaaatcagtcgccgctaaccatattttgtgtgtttcagatcatcacctcctctctttgtt 43539960  T
Q  164 ttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttat-cttgataaatcaaacatgttgtcgat 260  Q
    |   |||||||||||||||||| |||| |||||| |||||||||||||||| ||||||| ||||| ||  ||| |||||||||||||||||||||| |||    
T  43539961 t---atcgttgttgttgagaggattgttatcaaagcttcatccaggtattcataataccctaatttttaatattcttgataaatcaaacatgttgtagat 43540057  T
Q  261 ccgatcataattatgttc 278  Q
    ||||||||||| ||||||    
T  43540058 ccgatcataatcatgttc 43540075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 28421260 - 28421028
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||||| |||||    
T  28421260 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattgtgtgtttca 28421163  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
    |||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| ||||||| ||  ||| |    
T  28421162 gatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtattcctaatagcctaattcttaatatcc 28421071  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  28421070 ttgataaatcaaacatgtcgtagatccgatcataatcatgttc 28421028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 3811470 - 3811238
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| |||  ||||||||||||||||||| ||| ||||||||| | ||  ||||| |||||    
T  3811470 aaactctctcttctccccatctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagccgccgctaactctat--tgtgtgtttca 3811373  T
Q  141 gatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatc-tt 237  Q
    |||||     ||| ||||||  | |  |||||||||| ||||||||||| | | ||| ||| |||||||||||||||||||| ||||| ||  |||| ||    
T  3811372 gatca-----tcttctctcttttgtt-atcgttgttgatgagagggttgccttgaaagctttatccaggtattcctaataccctaattcttaatatcctt 3811279  T
Q  238 gataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| || |||||||||||||| ||||||    
T  3811278 gataaatcaaacatgtcgtagatccgatcataatcatgttc 3811238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 3817612 - 3817380
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| |||  ||||||||||||||||||| ||| ||||||||| | ||  ||||| |||||    
T  3817612 aaactctctcttctccccatctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagccgccgctaactctat--tgtgtgtttca 3817515  T
Q  141 gatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatc-tt 237  Q
    |||||    ||||| ||| || ||   |||||||||| ||||||||||| | | ||| ||| |||||||||||||||||||| ||||| ||  |||| ||    
T  3817514 gatcatc--ttctc-tctttggtt---atcgttgttgatgagagggttgccttgaaagctttatccaggtattcctaataccctaattcttaatatcctt 3817421  T
Q  238 gataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| || |||||||||||||| ||||||    
T  3817420 gataaatcaaacatgtcgtagatccgatcataatcatgttc 3817380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 351637 - 351876
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    ||||||||||| |||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||| ||||| ||| ||||||||| |  | |||    
T  351637 tacacgacaaa-ctctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgccgctaactc--tattg 351733  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattatt 229  Q
    ||| ||||||||||     |||||||| |   ||  |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| ||||||| ||    
T  351734 tgtgtttcagatca-----tctcctcttttggtt--atcgttgttgatgagagggctgccttgaaagctttatccaggtattcctaatagcctaattctt 351826  T
Q  230 gttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
      ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  351827 aatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 351876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 20238800 - 20239041
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  20238800 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 20238897  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattatt 229  Q
    ||| ||||||||||   | ||  |||| || ||   || ||||||| |||||||| || | | ||| ||| |||||||||||||||||| ||||||| ||    
T  20238898 tgtgtttcagatca---tctcatctctttggtt---attgttgttgatgagagggctgccttgaaagctttatccaggtattcctaataccctaattctt 20238991  T
Q  230 gttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
      ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  20238992 aatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 20239041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 5979484 - 5979394
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    |||||||||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||||||  |||||||||    
T  5979484 tacacgacaatactctctcttctccccatctgaagagaacttgaggcataaaagtaccggttgaggaagaaccaaattagtcgccgctaac 5979394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 15843805 - 15843886
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    ||||||||||||||| || ||| |||||||||||| ||||||||||| | |||||||||||||||||| ||| |||||||||    
T  15843805 aaactctctattctccccatctgaagagaacttgaggcataaatgtaccagttgaggaagaaccaaatcagccgccgctaac 15843886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 15860914 - 15860995
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    ||||||||||||||| || ||| |||||||||||| ||||||||||| | |||||||||||||||||| ||| |||||||||    
T  15860914 aaactctctattctccccatctgaagagaacttgaggcataaatgtaccagttgaggaagaaccaaatcagccgccgctaac 15860995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 26383603 - 26383716
Alignment:
Q  168 atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttat-cttgataaatcaaacatgttgtcgatccga 264  Q
    ||||||||||||||||||| || ||||||| ||||||| |||||||||||||||| ||||| ||  ||| ||||||||||||||||||| || |||||||    
T  26383603 atcgttgttgttgagagggctgccatcaaagcttcatcaaggtattcctaataccctaattcttagtatgcttgataaatcaaacatgtcgtagatccga 26383702  T
Q  265 tcataattatgttc 278  Q
    |||| || ||||||    
T  26383703 tcatgatcatgttc 26383716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 22742074 - 22741994
Alignment:
Q  198 cttcatccaggtattcctaatacctaattattgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||||||||||||||||||||||||||||  |   |||||||||||||||||||||| || |||||||||||||| ||||||    
T  22742074 cttcatccaggtattcctaatacctaatcctcaatatcttgataaatcaaacatgtcgtagatccgatcataatcatgttc 22741994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 35150842 - 35150738
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| ||||||| ||| |||||||| ||| ||||||||||  || |||||| |||||    
T  35150842 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaagaataaccaaatcagccgccgctaaccatattttgtgtgtttca 35150743  T
Q  141 gatca 145  Q
    |||||    
T  35150742 gatca 35150738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 339230 - 339319
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    ||||||||||| |||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||| ||||| ||| |||||||||    
T  339230 tacacgacaaa-ctctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgccgctaac 339319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 35148310 - 35148206
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| ||||||| |||| ||||||| ||| |||||||||||||||||||| ||| || ||| |||  || |||||| |||||    
T  35148310 aaactctctcttctccccatctgaagagaatttgaggcataaaggtaccggttgaggaagaaccaaatcagccgctgctgaccatattttgtgtgtttca 35148211  T
Q  141 gatca 145  Q
    |||||    
T  35148210 gatca 35148206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 339383 - 339461
Alignment:
Q  202 atccaggtattcctaata-cctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| ||||||| ||  |||| |||||||||||||||||| || |||||||||||||| ||||||    
T  339383 atccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 339461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 26380942 - 26381109
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| |  ||| |||| ||||| | ||||||| ||| | |||||||||||||||||| ||| |||||||||   | |||||||||||||    
T  26380942 aaactctctcttctcccgatctgaagaaaactttaggcataaaggtagcagttgaggaagaaccaaatcagccgccgctaacgtaa-gttgtgtatttca 26381040  T
Q  141 gatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc 221  Q
     |||| ||||||| |            |||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  26381041 tatcatggtttcttc------------atcgttgttgttgagagggttgtcatcaaagcttcatcca-gtactcctaatacc 26381109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 18656963 - 18656872
Alignment:
Q  31 atacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    |||||||||||| || ||| |||||||||||| |||||||||  |  |||||| ||| | |||||||||||||||||| ||||  ||||||||    
T  18656963 atacacgacaaa-ctttctcttctctccgtctgaagagaactaaagacataaaagtaacagttgaggaagaaccaaatcagctttcgctaacc 18656872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 22742232 - 22742148
Alignment:
Q  39 caaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    ||||||||||| ||||| |  ||| |||||||||||| ||||||| ||| | ||||| ||| |||||||| ||| ||||||||||    
T  22742232 caaaactctctcttctcccaatctgaagagaacttgaggcataaaggtaccagttgatgaaaaaccaaatcagccgccgctaacc 22742148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 35148152 - 35148073
Alignment:
Q  202 atccaggtattcctaatacc--taattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||||||||||||||||||||  ||||| ||  |||| |||||||||||||| ||| || |||||||||||||| ||||||    
T  35148152 atccaggtattcctaatacccctaattcttaatatccttgataaatcaaacgtgtcgtagatccgatcataatcatgttc 35148073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Original strand, 24691085 - 24691115
Alignment:
Q  205 caggtattcctaatacctaattattgttatc 235  Q
    |||||||||||||||||||||||||||||||    
T  24691085 caggtattcctaatacctaattattgttatc 24691115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 42767442 - 42767364
Alignment:
Q  202 atccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||| ||||||||||||| ||||| ||  |||| ||||||||||||| |||| || |||||||||||||| ||||||    
T  42767442 atccagatattcctaataccctaattcttaatatccttgataaatcaaatatgtcgtagatccgatcataatcatgttc 42767364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 30219428 - 30219315
Alignment:
Q  168 atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatcttga-taaatcaaacatgttgtcgatccga 264  Q
    ||||||| || ||||| ||||||||| ||| ||| |||||| ||||||||||||| ||||| ||  |||||| | |||||||||||||| || ||||||     
T  30219428 atcgttgatgctgagatggttgtcatgaaagctttatccagatattcctaataccataattcttaatatctttaataaatcaaacatgtcgtagatccgt 30219329  T
Q  265 tcataattatgttc 278  Q
    ||||| | ||||||    
T  30219328 tcatattcatgttc 30219315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 25354061 - 25354301
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||||||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  25354061 tacacgacaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 25354158  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| ||  |  ||| ||| |||||||||||||||||| |||||||     
T  25354159 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgctacaaaagctttatccaggtattcctaataccctaattc 25354250  T
Q  228 ttgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  |||||||||||||||||||||| || |||||||||||||| ||||||    
T  25354251 ttaatatcttgataaatcaaacatgtcgtagatccgatcataatcatgttc 25354301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 8651113 - 8650872
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  8651113 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 8651016  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| |||||||     
T  8651015 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtattcctaataccctaattc 8650924  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  8650923 ttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 8650872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 4580631 - 4580390
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  4580631 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 4580534  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
     || ||||||||||     |||||||||  || ||   |||||||||| |||||||||||| |  ||| ||| |||||||||||||||||| |||||||     
T  4580533 cgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggttgttacaaaagctttatccaggtattcctaataccctaattc 4580442  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| |||| |||||||||||||| || |||||||||||||| ||||||    
T  4580441 ttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttc 4580390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 25343474 - 25343714
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||||||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  25343474 tacacgacaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 25343571  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatac-ctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| ||| |||| ||  |  ||| ||| ||| ||||||||||||||| ||||||     
T  25343572 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgaaagggctgctacaaaagctttatctaggtattcctaatactctaattc 25343663  T
Q  228 ttgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||||||||||||||||| |||| || |||||||||||||| ||||||    
T  25343664 ttaatatcttgataaatcaaaaatgtcgtagatccgatcataatcatgttc 25343714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 17581462 - 17581666
Alignment:
Q  16 aggctatggtccccaa----tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattag 111  Q
    ||||||||||||||||    |||||||||||||||||| ||||| || ||| |||||||||||| |||||||||||   |||||||||||||||||| ||    
T  17581462 aggctatggtccccaaactgtacacgacaaaactctctcttctccccatctgaagagaacttgaggcataaatgtacaagttgaggaagaaccaaatcag 17581561  T
Q  112 ctgccgctaacccgatgttgtgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggta 210  Q
    ||||| |||| ||| || ||| |  ||||||||||     |||||||||  ||    | |||||||||||||||| |||||| ||| ||| |||||||||    
T  17581562 ctgccactaa-ccgttgatgtttgcttcagatcac-----ctcctctctccttgtcgttgttgttgttgagagggctgtcatgaaagctttatccaggta 17581655  T
Q  211 ttcctaatacc 221  Q
    |||||||||||    
T  17581656 ttcctaatacc 17581666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 31756521 - 31756417
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| | ||||| ||| | |||||||||||||||||| ||| ||||||||||| || |||||| |||||    
T  31756521 aaactctctcttctccccatctgaagagaacttgaggtataaaggtacctgttgaggaagaaccaaatcagccgccgctaaccctatattgtgtgtttca 31756422  T
Q  141 gatca 145  Q
    |||||    
T  31756421 gatca 31756417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 21197343 - 21197249
Alignment:
Q  29 caatacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    |||||| || ||| ||||||| ||||| || ||| |||||||||||| |||||||  || |||||||||||||||||||| ||| ||||||||||    
T  21197343 caatactcggcaatactctctcttctccccatctgaagagaacttgaggcataaagataccggttgaggaagaaccaaatcagccgccgctaacc 21197249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 21197198 - 21197090
Alignment:
Q  171 gttgttgttgagagggttgtcatcaaac-ttcatccaggtattcctaatacctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcat 268  Q
    |||||||||||||||| || ||| |||  || |||||||||||| |||||| ||||| ||| |||| ||||||||||||||||||||| |||||| ||||    
T  21197198 gttgttgttgagagggctgccataaaagatttatccaggtattcataatac-taattcttgatatccttgataaatcaaacatgttgtagatccgttcat 21197100  T
Q  269 aattatgttc 278  Q
    | ||||||||    
T  21197099 acttatgttc 21197090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 21783486 - 21783378
Alignment:
Q  171 gttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcat 268  Q
    |||||||||||||||| || ||| ||| ||| || |||||||||||||||| ||||| ||| |||| |||||||||||||||||| || |||||| ||||    
T  21783486 gttgttgttgagaggggtgccataaaagctttattcaggtattcctaatac-taattcttgatatccttgataaatcaaacatgtcgtagatccgttcat 21783388  T
Q  269 aattatgttc 278  Q
    | ||||||||    
T  21783387 atttatgttc 21783378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 21789709 - 21789601
Alignment:
Q  171 gttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcat 268  Q
    |||||||||||||||| || ||| ||| ||| || |||||||||||||||| ||||| ||| |||| |||||||||||||||||| || |||||| ||||    
T  21789709 gttgttgttgagaggggtgccataaaagctttattcaggtattcctaatac-taattcttgatatccttgataaatcaaacatgtcgtagatccgttcat 21789611  T
Q  269 aattatgttc 278  Q
    | ||||||||    
T  21789610 atttatgttc 21789601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 21770875 - 21770786
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    |||||| ||||||||||| |||||  | ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| || |||||||    
T  21770875 tacacggcaaaactctctcttctc--catctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgctgctaacc 21770786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 21770735 - 21770627
Alignment:
Q  171 gttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcat 268  Q
    |||||||||||||||| || ||| ||| ||| || ||| |||||||||||| ||||| ||| |||| |||||||||||||||||| || |||||| ||||    
T  21770735 gttgttgttgagagggctgccataaaagctttattcagatattcctaatac-taattcttgatatccttgataaatcaaacatgtcgtagatccgttcat 21770637  T
Q  269 aattatgttc 278  Q
    | ||||||||    
T  21770636 atttatgttc 21770627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 21782935 - 21782822
Alignment:
Q  168 atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccga 264  Q
    |||||||||| |||||||| || | | ||| ||| |||||| ||||||||||||| ||||| ||  |||| |||||||||||||||||| || |||||||    
T  21782935 atcgttgttgatgagagggctgccttgaaagctttatccagctattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccga 21782836  T
Q  265 tcataattatgttc 278  Q
    ||||||| ||||||    
T  21782835 tcataatcatgttc 21782822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 21191179 - 21190935
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaag---cataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatg 128  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| |   |||||| ||| |||||||||||||||||||| ||| ||||||||| |  |     
T  21191179 tacacggcaatactctctcttctccccatctgaagagaacttgatgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--ta 21191082  T
Q  129 ttgtgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaa 224  Q
    |||||| ||||| ||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| ||||||||||| |||||| |||||    
T  21191081 ttgtgtgtttcatatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtatttctaataccctaa 21190990  T
Q  225 ttattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    || ||  |||| ||||||||||||| || | || |||||||||||||| ||||||    
T  21190989 ttcttaatatctttgataaatcaaatatatcgtagatccgatcataatcatgttc 21190935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 32035433 - 32035355
Alignment:
Q  202 atccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||||| ||||| ||  || | |||||||||||||||||| || |||||||||||||| ||||||    
T  32035433 atccaggtattcctaataccctaattcttaataaccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 32035355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 8662922 - 8662850
Alignment:
Q  208 gtattcctaata-cctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||| ||||||| ||  |||| |||||||||||||||||| || |||||||||||||| ||||||    
T  8662922 gtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 8662850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 13007597 - 13007664
Alignment:
Q  79 ataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcac 146  Q
    |||||||||||||||||||||||||||||| | | | | |||| || | ||||||| |||||||||||    
T  13007597 ataaatgtatcggttgaggaagaaccaaatcaaccgtcactaatcctaagttgtgtgtttcagatcac 13007664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 18778595 - 18778673
Alignment:
Q  202 atccaggtattcctaatacc--taattattgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| |||  ||||| ||  ||| ||||||||||||| | || || |||||||||||||||||||||    
T  18778595 atccaggtattcctaaaacccctaattcttaatatattgataaatcaaatacgtcgtagatccgatcataattatgttc 18778673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 1106229 - 1106294
Alignment:
Q  206 aggtattcctaatacct--aattattgttat-cttgataaatcaaacatgttgtcgatccgatcat 268  Q
    |||||||||||||||||  |||||||  ||| |||||| ||||||||||||||| |||||||||||    
T  1106229 aggtattcctaataccttgaattattaatattcttgatgaatcaaacatgttgtagatccgatcat 1106294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 30772140 - 30772373
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||| ||||| ||| |||||||||||  |||||||| |||||    
T  30772140 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgccgctaaccctttgttgtgtgtttca 30772239  T
Q  141 gatcacggtttctcc-tctctgatttagatcgttgttgttgagagggttgtcat-caaacttcatccaggtattcctaata-cctaattattgttat-ct 236  Q
    |||||   |  | || |||||  ||||     ||||||||||||||| || |||  |||||| ||||||||| |||||||| ||||||| ||  ||| ||    
T  30772240 gatca---tcacaccttctcttgttta-----ttgttgttgagagggctgccataaaaactttatccaggtaatcctaataccctaattcttaatatcct 30772331  T
Q  237 tgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  30772332 tgataaatcaaacatgttgtcgatccgatcataatcatgttc 30772373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 12686480 - 12686248
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||||| |||||    
T  12686480 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattgtgtgtttca 12686383  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
    |||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| ||||||| ||  ||| |    
T  12686382 gatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtattcctaatagcctaattcttaatatcc 12686291  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  12686290 ttgataaatcaaacatgtcgtagatccgatcataatcatgttc 12686248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 12692582 - 12692350
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||||| |||||    
T  12692582 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattgtgtgtttca 12692485  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
    |||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| ||||||| ||  ||| |    
T  12692484 gatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtattcctaatagcctaattcttaatatcc 12692393  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  12692392 ttgataaatcaaacatgtcgtagatccgatcataatcatgttc 12692350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 7389857 - 7389617
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||  ||||||||| |  | |||    
T  7389857 tacacggcaaaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagtcgccgctaactc--tattg 7389760  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||| |  |  |  ||| ||| |||||||||||||||||| |||||||     
T  7389759 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagagcggctacaaaagctttatccaggtattcctaataccctaattc 7389668  T
Q  228 ttgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  |||||||||||||||||||||| || |||||||||||||| ||||||    
T  7389667 ttaatatcttgataaatcaaacatgtcgtggatccgatcataatcatgttc 7389617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 32094531 - 32094441
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    |||||||||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||||||| |||||||||    
T  32094531 tacacgacaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaattagccgccgctaac 32094441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 278
Target Start/End: Original strand, 26509731 - 26509940
Alignment:
Q  66 gagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtttctcctctctgattt 165  Q
    ||||||| || ||||||| ||| || ||||||||| | ||||| ||| ||| |  || | ||||||||||||||||||| || ||||||||||    ||     
T  26509731 gagaactagaggcataaaggtaccgattgaggaagtatcaaatcagccgccaccgactctatgttgtgtatttcagatcgcgatttctcctct----ttc 26509826  T
Q  166 agatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttatcttgataaatcaaacatgttgtcgatccga 264  Q
    ||||||||| ||||||||||  |||||||||| |||||| ||  |||||||||||||||||| ||  ||||||||| ||||||| |||| || | |   |    
T  26509827 agatcgttgatgttgagaggactgtcatcaaagcttcattcatatattcctaatacctaattcttaatatcttgatgaatcaaatatgtcgtagtttata 26509926  T
Q  265 tcataattatgttc 278  Q
    ||||||||||||||    
T  26509927 tcataattatgttc 26509940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 41297129 - 41297367
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaact---tgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatg 128  Q
    |||||||||| ||||||| ||||| || ||| |||||||||   ||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  |     
T  41297129 tacacgacaatactctctcttctccccatctgaagagaactacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--ta 41297226  T
Q  129 ttgtgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaacttcatccaggtattcctaata-cctaat 225  Q
    |||||| |||||||||||     ||||||||  || ||   |||||||||| ||||||||||| | | ||     | |||||||||||||||| ||||||    
T  41297227 ttgtgtgtttcagatcac-----ctcctctccttggtt---atcgttgttgatgagagggttgccttgaa-----agccaggtattcctaataccctaat 41297313  T
Q  226 tattgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    | ||  ||| ||||||||||||||||||| || |||||||||||||||||||||    
T  41297314 tctttatatccttgataaatcaaacatgtcgtagatccgatcataattatgttc 41297367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 33849069 - 33848989
Alignment:
Q  168 atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttatcttgataaatcaa 247  Q
    ||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||  |||||||||| |||||    
T  33849069 atcgttgttgttgagaggactgtcatcaaaacttcatcaaggtattcctaatacctaattattagtatcttgatagatcaa 33848989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 19066413 - 19066331
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||| ||||| ||||||||||||||    
T  19066413 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagctgccgctaacc 19066331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 33753435 - 33753361
Alignment:
Q  168 atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttatcttgata 241  Q
    ||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||    
T  33753435 atcgttgttgttgagaggactgtcatcaaaacttcatcaaggtattcctaatacctaattattagtatcttgata 33753361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 20499988 - 20500064
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaat 108  Q
    |||||| ||||||||||| |||||||| | | |||||||||||| ||||||||||| ||||| ||||||||||||||    
T  20499988 tacacggcaaaactctctgttctctccatttgaagagaacttgaggcataaatgtaccggttaaggaagaaccaaat 20500064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 32094340 - 32094229
Alignment:
Q  169 tcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatc 266  Q
    |||||||||||||||||| ||  || ||| ||| || |||||||||||||||||||||| ||  |||| |||||||||||||||||| || ||||| |||    
T  32094340 tcgttgttgttgagagggctgctatgaaagctttattcaggtattcctaatacctaattcttaatatccttgataaatcaaacatgtcgtagatcctatc 32094241  T
Q  267 ataattatgttc 278  Q
    ||||| ||||||    
T  32094240 ataatcatgttc 32094229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 32097321 - 32097242
Alignment:
Q  43 actctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    ||||||||||||| || ||| |||||||||||| ||||||| ||| ||||||||||||||| |||| ||| |||||||||    
T  32097321 actctctattctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaactaaatcagccgccgctaac 32097242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 26318448 - 26318372
Alignment:
Q  155 ctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattg 230  Q
    ||||||| || ||||||||||||||||||||   ||||||||| ||||||  |||||||||||||||||||||||||    
T  26318448 ctctctgtttcagatcgttgttgttgagaggcccgtcatcaaagcttcattaaggtattcctaatacctaattattg 26318372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 14610027 - 14610110
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaaccc 124  Q
    ||||| ||| ||||| || ||| |||||||||| | ||||||| ||| |||||||||||||||||||| ||| |||||||||||    
T  14610027 aaactttcttttctccccatctgaagagaactttaggcataaaagtaccggttgaggaagaaccaaatcagccgccgctaaccc 14610110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 28525687 - 28525455
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||| ||| ||||||| ||| |||||||||||||| ||||| |||  ||||| || | ||  ||||| |||||    
T  28525687 aaactctctcttctccccatctgaagagaacgtgaggcataaaggtaccggttgaggaagaatcaaatcagccaccgctgactctat--tgtgtgtttca 28525590  T
Q  141 gatcacggtttctcctctctgatttag--atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatc- 235  Q
    |||||     ||||||||||   || |  |||||||||| |||||||| || | | ||| ||| |||||||||||| ||||||| ||||| ||  ||||     
T  28525589 gatca-----tctcctctct---ttggttatcgttgttgatgagagggctgccttgaaagctttatccaggtattcataataccctaattcttaatatcc 28525498  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    || ||||||||||||||| || |||||||||||||| ||||||    
T  28525497 ttaataaatcaaacatgtcgtagatccgatcataatcatgttc 28525455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 19060049 - 19059990
Alignment:
Q  64 aagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    |||||||||||| ||||||| ||| | |||||||||||||||||| ||| ||||||||||    
T  19060049 aagagaacttgaggcataaaagtaccagttgaggaagaaccaaatcagccgccgctaacc 19059990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 28531783 - 28531551
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||| ||| ||||||| |||  ||||||||||||| ||||| |||  ||||| || | ||  ||||| |||||    
T  28531783 aaactctctcttctccccatctgaagagaacgtgaggcataaaggtactggttgaggaagaatcaaatcagccaccgctgactctat--tgtgtgtttca 28531686  T
Q  141 gatcacggtttctcctctctgatttag--atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatc- 235  Q
    |||||     ||||||||||   || |  |||||||||| |||||||| || | | ||| ||| |||||||||||| ||||||| ||||| ||  ||||     
T  28531685 gatca-----tctcctctct---ttggttatcgttgttgatgagagggctgccttgaaagctttatccaggtattcataataccctaattcttaatatcc 28531594  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    || ||||||||||||||| || |||||||||||||| ||||||    
T  28531593 ttaataaatcaaacatgtcgtagatccgatcataatcatgttc 28531551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 30384677 - 30384505
Alignment:
Q  51 ttctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtt 150  Q
    ||||| || ||| ||||||||| || | ||||| ||| |||||||||||||||||||| ||  ||||||||  | ||||||||| |||||||| |         
T  30384677 ttctccccatctgaagagaactcgaggtataaaggtaccggttgaggaagaaccaaatcagtcgccgctaa-gctatgttgtgtgtttcagattagatca 30384579  T
Q  151 tctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc 221  Q
    |||||||||  || |||||||||||| ||  ||||| |||||||  ||| |||||||||||||||| |||||||    
T  30384578 tctcctctccttgttttagatcgttgatggcgagagagttgtcacgaaagcttcatccaggtattcttaatacc 30384505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 32097104 - 32097030
Alignment:
Q  205 caggtattcctaatacctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||| ||||||||||||||| ||  |||| |||||||||||||||||| || ||||| |||||||| ||||||    
T  32097104 caggtaatcctaatacctaattcttaatatccttgataaatcaaacatgtcgtagatcctatcataatcatgttc 32097030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 24054346 - 24054425
Alignment:
Q  202 atccaggtattcctaata--cctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||||||||||||||||||  || |||| ||  |||| |||||||||||||||||| || |||||||||||||| ||||||    
T  24054346 atccaggtattcctaatatcccaaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 24054425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 20500115 - 20500228
Alignment:
Q  168 atcgttgttgttgagagggttgtcatcaaacttc-atccaggtattcctaatac-ctaattattgttatc-ttgataaatcaaacatgttgtcgatccga 264  Q
    ||||||| ||||||||||| || ||| ||| ||  ||||||||||| ||||||| |||||| ||  |||| ||||||||||||  |||| || |||||||    
T  20500115 atcgttgatgttgagagggctgccataaaagttttatccaggtatttctaatactctaattcttagtatccttgataaatcaagtatgtcgtagatccga 20500214  T
Q  265 tcataattatgttc 278  Q
    ||||||| ||||||    
T  20500215 tcataatcatgttc 20500228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 37896411 - 37896367
Alignment:
Q  234 tcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||| ||||| || |||||||||||||| ||||||    
T  37896411 tcttgataaatcaatcatgtcgtagatccgatcataatcatgttc 37896367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 31986869 - 31986742
Alignment:
Q  131 gtgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattatt 229  Q
    |||||||| |||||||| |||||| ||||||||| | |||||||||||||| ||||  | ||||||| |||||| ||| |||||||||||||||||||||    
T  31986869 gtgtattttagatcacgatttctcttctctgattcatatcgttgttgttgaaagggccgccatcaaaacttcattcagatattcctaatacctaattatt 31986770  T
Q  230 gttat-cttgataaatcaaacatgttgt 256  Q
    ||||| ||||||||||||||||||||||    
T  31986769 gttatccttgataaatcaaacatgttgt 31986742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 48160809 - 48161049
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| |||  ||||||||||||||||||||||  ||||||||| | ||  ||    
T  48160809 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaattagtcgccgctaactctat--tg 48160906  T
Q  132 tgtatttcagatcacggtttctcctctctgatttag--atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taatta 227  Q
    ||| ||||||||||     ||||||||||   || |  |||||||||| |||||||| ||| |  ||| ||| || ||||||||||||||||| |||||     
T  48160907 tgtgtttcagatca-----tctcctctct---ttggttatcgttgttgatgagagggctgttacaaaagctttattcaggtattcctaataccctaattc 48160998  T
Q  228 ttgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  |||||||||||||||||||||| || |||||||||||||||||||||    
T  48160999 ttaatatcttgataaatcaaacatgtcgtagatccgatcataattatgttc 48161049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 48167028 - 48167268
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| |||  ||||||||||||||||||||||  ||||||||| | ||  ||    
T  48167028 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaattagtcgccgctaactctat--tg 48167125  T
Q  132 tgtatttcagatcacggtttctcctctctgatttag--atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taatta 227  Q
    ||| ||||||||||     ||||||||||   || |  |||||||||| |||||||| ||| |  ||| ||| || ||||||||||||||||| |||||     
T  48167126 tgtgtttcagatca-----tctcctctct---ttggttatcgttgttgatgagagggctgttacaaaagctttattcaggtattcctaataccctaattc 48167217  T
Q  228 ttgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  |||||||||||||||||||||| || |||||||||||||||||||||    
T  48167218 ttaatatcttgataaatcaaacatgtcgtagatccgatcataattatgttc 48167268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 44831947 - 44831681
Alignment:
Q  16 aggctatggtccccaatacacg--acaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagct 113  Q
    |||||||||||||||||| ||   ||| |||||||| |||||  | ||  |||||||||||| |||||||  || ||||||||||||||||| || |||     
T  44831947 aggctatggtccccaatataccgaacacaactctctcttctccgcatccgaagagaacttgaggcataaaaataccggttgaggaagaaccacatcagcc 44831848  T
Q  114 gccgctaacccgatgttgtgtatttcagatca-cggtttctc-ctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggta 210  Q
    | ||||||||| || |||||| |||||||||| |   ||||| ||||||| ||   ||||||||||||||||||||||| |||||| ||||||| |||||    
T  44831847 gtcgctaaccctattttgtgtgtttcagatcatcaccttctctctctctgttt---atcgttgttgttgagagggttgttatcaaagcttcatctaggta 44831751  T
Q  211 ttcctaata-cctaattattgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||| ||||| |||| || ||  ||| |||||||||| |||||||| || ||| |||||||| | ||||||    
T  44831750 ttcttaataccctagttcttaatatccttgataaattaaacatgtcgtagattcgatcatattcatgttc 44831681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 6257515 - 6257274
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  6257515 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 6257418  T
Q  132 tgtatttcagatcacggtttctcct--ctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     ||||||  || || ||   |||||||||| |||||||| ||  |  ||| ||| |||||||||||||||||| |||||||     
T  6257417 tgtgtttcagatca-----tctcctcactttggtt---atcgttgttgatgagagggctgctacgaaagctttatccaggtattcctaatatcctaattc 6257326  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||   || |||||||||||||||||||||| |||||||||||||| ||||||    
T  6257325 ttaacatccttgataaatcaaacatgttgtagatccgatcataatcatgttc 6257274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 10739640 - 10739408
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| ||||||| |||| ||||||| |||||||||||||||||||||||| ||| ||||||||| |  | |||||| |||||    
T  10739640 aaactctctcttctccccatctgaagagaatttgaggcataaaggtatcggttgaggaagaaccaaatcagccgccgctaactc--tattgtgtgtttca 10739543  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
     ||||     |||||||||  || ||   |||||||||| |||||||| || | | |||  || |||||||||||||||||| ||||||| ||  ||| |    
T  10739542 aatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaaggtttatccaggtattcctaataccctaattcttaatatcc 10739451  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  10739450 ttgataaatcaaacatgtcgtagatccgatcataatcatgttc 10739408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 10953409 - 10953177
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| ||||||| |||| ||||||| |||||||||||||||||||||||| ||| ||||||||| |  | |||||| |||||    
T  10953409 aaactctctcttctccccatctgaagagaatttgaggcataaaggtatcggttgaggaagaaccaaatcagccgccgctaactc--tattgtgtgtttca 10953312  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
     ||||     |||||||||  || ||   |||||||||| |||||||| || | | |||  || |||||||||||||||||| ||||||| ||  ||| |    
T  10953311 aatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaaggtttatccaggtattcctaataccctaattcttaatatcc 10953220  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  10953219 ttgataaatcaaacatgtcgtagatccgatcataatcatgttc 10953177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 33458576 - 33458336
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    ||||||||||| || ||| ||||| || ||| |||||||||||| ||||||| |||||||||||| ||||||||||| ||| ||||||||| |  | |||    
T  33458576 tacacgacaaa-ctttctcttctccccatctgaagagaacttgaggcataaaggtatcggttgagaaagaaccaaatcagccgccgctaactc--tattg 33458480  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttg-tcatcaaacttcatccaggtattcctaata-cctaattatt 229  Q
    ||| ||||||||||   | ||  |||| || ||   |||||||||| |||||||| || | |  || ||| |||||||||||||||||| ||||||| ||    
T  33458479 tgtgtttcagatca---tctcatctctttggtt---atcgttgttgatgagagggctgctaagaaagctttatccaggtattcctaataccctaattctt 33458386  T
Q  230 gttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
      ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  33458385 aatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 33458336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 24287836 - 24288077
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  24287836 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 24287933  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| | |||||| ||  || |||  || |||||||||||||||||| |||||||     
T  24287934 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgattagagggctgctatgaaagttttatccaggtattcctaataccctaattc 24288025  T
Q  228 tt-gttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  | | ||||||||||||||||||| || ||| |||||||||| ||||||    
T  24288026 ttaataaccttgataaatcaaacatgtcgtagatacgatcataatcatgttc 24288077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 278
Target Start/End: Original strand, 3769464 - 3769657
Alignment:
Q  77 gcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtttctcctctctgatttagatcgttgtt 176  Q
    |||||||| ||  ||||||||||||||||||| ||| ||| ||||||  ||||||||||||||| |||||| ||||| |||| ||||      ||||| |    
T  3769464 gcataaatatacgggttgaggaagaaccaaatcagccgccactaacct-atgttgtgtatttcacatcacgatttcttctctgtgat------cgttgct 3769556  T
Q  177 gttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattat 274  Q
    |||||||||     ||||||| | |||| || ||||||||||||||||||||||  |||| ||||| ||| |||||||| || |||||||||||||| ||    
T  3769557 gttgagaggac---catcaaagcctcattcaagtattcctaatacctaattattaatatccttgattaatgaaacatgtcgtagatccgatcataatcat 3769653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 33461693 - 33461462
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| || ||||||||| ||||||| ||| |||||||||||||| ||||| ||| ||||||||| |  | |||||| |||||    
T  33461693 aaactctctcttctccccatctgaaaagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgccgctaactc--tattgtgtgtttca 33461596  T
Q  141 gatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa--cttcatccaggtattcctaata-cctaattattgttatctt 237  Q
    |||||   | ||  |||| |||||   |||||||||| |||||||| || |  ||||  ||| |||||| ||||||||||| ||||||| ||  ||||||    
T  33461595 gatca---tctcatctctttgatt---atcgttgttgatgagagggctg-ctgcaaaagctttatccagatattcctaataccctaattcttaatatctt 33461503  T
Q  238 gataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| ||  |||||| |||||| ||||||    
T  33461502 gataaatcaaacatgtcgtaaatccgaccataatcatgttc 33461462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 4632372 - 4632481
Alignment:
Q  171 gttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatcttgataaatcaaacatgttgtcgatccgatcat 268  Q
    ||||||||||| ||||||||||| ||| ||| ||||| ||||| || ||||| ||||| ||  |||||||||||||||||||||| || |||||||||||    
T  4632372 gttgttgttgaaagggttgtcatgaaagctttatccaagtatttctgataccctaattcttaatatcttgataaatcaaacatgtcgtagatccgatcat 4632471  T
Q  269 aattatgttc 278  Q
    ||| ||||||    
T  4632472 aatcatgttc 4632481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 45236487 - 45236543
Alignment:
Q  67 agaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  45236487 agaacttgaaacagaaatgtatcggttgaggaagaaccaaattagctgccactaacc 45236543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 271
Target Start/End: Original strand, 49976445 - 49976670
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccg-atgttgtgtatttc 139  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| || ||||||||||||||||| ||| |||||||||||  || |||||| |||     
T  49976445 aaactctctcttctccccatctgaagagaacttgaggcataaa-gtaccg-ttgaggaagaaccaaatcagccgccgctaacccttattttgtgtgtttg 49976542  T
Q  140 agatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatac-ctaattattgttatctt 237  Q
    ||||||     ||  |||| || ||   ||||||||||||||||||  ||| |||||| |||||||  |||||||||||||| ||||||||| |   |||    
T  49976543 agatcatcacctcctctctttgttt---atcgttgttgttgagaggagtgttatcaaagcttcatct-ggtattcctaatactctaattattatc--ctt 49976636  T
Q  238 gataaatcaaacatgttgtcgatccgatcataat 271  Q
    |||||||||||||||| || ||||||||||||||    
T  49976637 gataaatcaaacatgtcgtagatccgatcataat 49976670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 26957113 - 26957022
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||  ||||||||||    
T  26957113 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagtcgccgctaacc 26957022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 10733653 - 10733572
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    ||||||||| ||||| || ||| ||||||| |||| ||||||| |||||||||||||||||||||||| ||| | |||||||    
T  10733653 aaactctctcttctccccatctgaagagaatttgaggcataaaggtatcggttgaggaagaaccaaatcagccgtcgctaac 10733572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 10947422 - 10947341
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    ||||||||| ||||| || ||| ||||||| |||| ||||||| |||||||||||||||||||||||| ||| | |||||||    
T  10947422 aaactctctcttctccccatctgaagagaatttgaggcataaaggtatcggttgaggaagaaccaaatcagccgtcgctaac 10947341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 26963518 - 26963410
Alignment:
Q  171 gttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttatc-ttgataaatcaaacatgttgtcgatccgatcat 268  Q
    |||||||||||||||| |  ||| ||| ||| ||||||||||||||||||| ||||| ||| |||| |||||||||||||||||| || |||||| ||||    
T  26963518 gttgttgttgagagggctaccataaaagctttatccaggtattcctaatac-taattcttgatatccttgataaatcaaacatgtcgtagatccgttcat 26963420  T
Q  269 aattatgttc 278  Q
    | ||||||||    
T  26963419 acttatgttc 26963410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 35177678 - 35177759
Alignment:
Q  64 aagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatca 145  Q
    |||||||||||| |||||||||||||||||||| || || ||||| ||  ||||||||| | ||||||||| ||||||||||    
T  35177678 aagagaacttgaggcataaatgtatcggttgagaaataatcaaatcaggcgccgctaactctatgttgtgtgtttcagatca 35177759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 10733393 - 10733315
Alignment:
Q  202 atccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||||| ||||| ||  |||| |||||||||||||||||| || |||||||||||||| ||||||    
T  10733393 atccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 10733315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 10947162 - 10947084
Alignment:
Q  202 atccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||||| ||||| ||  |||| |||||||||||||||||| || |||||||||||||| ||||||    
T  10947162 atccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 10947084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 278
Target Start/End: Original strand, 50168451 - 50168683
Alignment:
Q  39 caaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtattt 138  Q
    ||||||||||| |||||||| ||| |||||||||||| ||||||| ||| | ||||||||||||| |||| | | |||||||| ||  |||||| | |||    
T  50168451 caaaactctcttttctctccatctgaagagaacttgaggcataaaggta-ccgttgaggaagaactaaatcaaccgccgctaatcc-ttgttgtttgttt 50168548  T
Q  139 cagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgtta-tct 236  Q
    ||||||||    ||  ||||||||||    | ||||||||||||  || || ||| ||| | ||| |||||||||||| |||||||||| ||  || |||    
T  50168549 cagatcac---atcctctctctgatt---gttgttgttgttgag-tggctgccatgaaagcctcaaccaggtattccttatacctaattgttaatattct 50168641  T
Q  237 tgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||||||||||||||||| ||  || |||||||||| ||||||    
T  50168642 tgataaatcaaacatgtcgtatattcgatcataatcatgttc 50168683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 4632263 - 4632321
Alignment:
Q  64 aagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    |||||||||||| |||||||  || |||||||||||||||||||| ||  |||||||||    
T  4632263 aagagaacttgaggcataaagataccggttgaggaagaaccaaatcagaagccgctaac 4632321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 17627071 - 17627010
Alignment:
Q  51 ttctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagc 112  Q
    ||||| || ||| ||||||||| |||||||||| ||| ||||||||||||||| ||| ||||    
T  17627071 ttctccccatctgaagagaactagaagcataaaagtaccggttgaggaagaacaaaactagc 17627010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 10244644 - 10244403
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  10244644 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaatgtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 10244547  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||| ||||     |||||||||  || ||   |||||||||| |||||||| |||| | ||| ||| |||||||||||||||||| |||||||     
T  10244546 tgtgtttcatatca-----tctcctctctttggtt---atcgttgttgatgagagggctgtcttgaaagctttatccaggtattcctaatagcctaattc 10244455  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  10244454 ttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 10244403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 11840035 - 11839794
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  11840035 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 11839938  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| |||||||     
T  11839937 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtattcctaataccctaattc 11839846  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  11839845 ttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 11839794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 38455860 - 38455619
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  38455860 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 38455763  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| || |   ||| ||| |||||||||||||||||| |||||||     
T  38455762 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgcctcgaaagctttatccaggtattcctaataccctaattc 38455671  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| |||||||||||||||||||||| |||||||||||||| ||||||    
T  38455670 ttaatatccttgataaatcaaacatgttgtagatccgatcataatcatgttc 38455619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 10238522 - 10238281
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  10238522 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaatgtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 10238425  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattatt 229  Q
    ||| ||||| ||||   | ||  |||| || ||   |||||||||| |||||||| |||| | ||| ||| |||||||||||||||||| ||||||| ||    
T  10238424 tgtgtttcatatca---tatcctctctttggtt---atcgttgttgatgagagggctgtcttgaaagctttatccaggtattcctaatagcctaattctt 10238331  T
Q  230 gttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
      ||| ||||||||||||||||||| || |||| ||||||||| ||||||    
T  10238330 aatatccttgataaatcaaacatgtcgtagatctgatcataatcatgttc 10238281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 10760960 - 10760719
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||||||| ||||||| ||||| || ||| |||||||||||| ||||||| |||  ||||||||||||||||||| ||  ||||||||| |  | |||    
T  10760960 tacacgacaatactctctcttctccccatctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagtcgccgctaactc--tattg 10760863  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| |||||||     
T  10760862 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtattcctaataccctaattc 10760771  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  10760770 ttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 10760719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 38449373 - 38449132
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  38449373 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 38449276  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| || |   |||  || |||||||||||||||||| |||||||     
T  38449275 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgcctcgaaagttttatccaggtattcctaataccctaattc 38449184  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| |||||||||||||||||||||| |||||||||||||| ||||||    
T  38449183 ttaatatccttgataaatcaaacatgttgtagatccgatcataatcatgttc 38449132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 8331645 - 8331877
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||||| ||| |    
T  8331645 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattgtgtgtttta 8331742  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
    |||||     |||||||||  || ||   ||||||||||  ||||||| || | | ||| ||| |||||||||||||||||| ||||||| ||  ||| |    
T  8331743 gatca-----tctcctctctttggtt---atcgttgttgacgagagggctgccttgaaagctttatccaggtattcctaatagcctaattcttaatatcc 8331834  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  8331835 ttgataaatcaaacatgtcgtagatccgatcataatcatgttc 8331877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 10769279 - 10769168
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  10769279 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 10769182  T
Q  132 tgtatttcagatca 145  Q
    ||||||||||||||    
T  10769181 tgtatttcagatca 10769168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 17056094 - 17055862
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||||| |||||    
T  17056094 aaactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattgtgtgtttca 17055997  T
Q  141 gatcacggtttctcc--tctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
    |||||     |||||  ||| || ||   | |||||||| | |||||| ||  || ||| ||| |||||||||||||||||| ||||||| ||  ||| |    
T  17055996 gatca-----tctcctatctttggtt---accgttgttgattagagggctgctatgaaagctttatccaggtattcctaataccctaattcttaatatcc 17055905  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  17055904 ttgataaatcaaacatgtcgtagatccgatcataatcatgttc 17055862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 42191530 - 42191296
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| |||  |||||||| |  | |||    
T  42191530 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccaccgctaactc--tattg 42191433  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   || ||||||| |||||||| || | | ||| ||| |||||||||||||||||| |||||||     
T  42191432 tgtgtttcagatca-----tctcctctctttggtt---atagttgttgatgagagggctgccttgaaagctttatccaggtattcctaataccctaattc 42191341  T
Q  228 ttgtta-tcttgataaatcaaacatgttgtcgatccgatcataat 271  Q
    ||  ||  ||||||||||||||||||| || ||||||||||||||    
T  42191340 ttaatacccttgataaatcaaacatgtcgtagatccgatcataat 42191296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 42197472 - 42197238
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| |||  |||||||| |  | |||    
T  42197472 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccaccgctaactc--tattg 42197375  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   || ||||||| |||||||| || | | ||| ||| |||||||||||||||||| |||||||     
T  42197374 tgtgtttcagatca-----tctcctctctttggtt---atagttgttgatgagagggctgccttgaaagctttatccaggtattcctaataccctaattc 42197283  T
Q  228 ttgtta-tcttgataaatcaaacatgttgtcgatccgatcataat 271  Q
    ||  ||  ||||||||||||||||||| || ||||||||||||||    
T  42197282 ttaatacccttgataaatcaaacatgtcgtagatccgatcataat 42197238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 46656656 - 46656770
Alignment:
Q  163 tttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttatc-ttgataaatcaaacatgttgtcga 259  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||| ||| ||| |   |||| |||||||||||||||| | || ||    
T  46656656 tttagatcgttgttgttgagagggttgtcatgaaagcttcattcaggtatttctaataccctcattctcaatatcattgataaatcaaacatatcgtaga 46656755  T
Q  260 tccgatcataattat 274  Q
    |||||||||||||||    
T  46656756 tccgatcataattat 46656770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 271
Target Start/End: Original strand, 13444920 - 13445144
Alignment:
Q  45 tctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatc 144  Q
    ||||| ||||| || ||| |||||||||||| ||||||| |||||||||||||||||||||||| ||| ||| |||||||  |||| |||  ||||||||    
T  13444920 tctctcttctccccatctgaagagaacttgaggcataaaagtatcggttgaggaagaaccaaatcagccgccactaaccc--tgttttgtggttcagatc 13445017  T
Q  145 acggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaa-acttcatccaggtattcctaata-cctaattattgttat-cttgata 241  Q
    |     |||||||| || ||   || ||||||  |||||| | |||||| ||   || ||| |||||||||||||| ||||||| ||  ||| |||||||    
T  13445018 atcacatctcctctttgttt---atggttgttactgagagagctgtcatgaatgttttatctaggtattcctaataccctaattcttaatatccttgata 13445114  T
Q  242 aatcaaacatgttgtcgatccgatcataat 271  Q
    |||||||||||| || ||||||||||||||    
T  13445115 aatcaaacatgtcgtagatccgatcataat 13445144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 26429727 - 26429639
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgcta 120  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| |||||||    
T  26429727 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgcta 26429639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 13837534 - 13837613
Alignment:
Q  43 actctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| |||||||||    
T  13837534 actctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 13837613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 49151470 - 49151702
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||| ||| ||||||| ||| |||||||||||||| ||||| |||  |||||||| |  | |||||| |||||    
T  49151470 aaactctctcttctccccatctgaagagaacgtgaggcataaaggtaccggttgaggaagaatcaaatcagccaccgctaactc--tattgtgtgtttca 49151567  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
    |||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||| ||||| ||||||| ||  ||| |    
T  49151568 gatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtattcataataccctaattcttaatatcc 49151659  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    || ||||||||||||||| || |||||||||||||| ||||||    
T  49151660 ttaataaatcaaacatgtcgtagatccgatcataatcatgttc 49151702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 49157537 - 49157769
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||| ||| ||||||| ||| |||||||||||||| ||||| |||  |||||||| |  | |||||| |||||    
T  49157537 aaactctctcttctccccatctgaagagaacgtgaggcataaaggtaccggttgaggaagaatcaaatcagccaccgctaactc--tattgtgtgtttca 49157634  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
    |||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||| ||||| ||||||| ||  ||| |    
T  49157635 gatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtattcataataccctaattcttaatatcc 49157726  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    || ||||||||||||||| || |||||||||||||| ||||||    
T  49157727 ttaataaatcaaacatgtcgtagatccgatcataatcatgttc 49157769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 11846245 - 11846132
Alignment:
Q  168 atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttat-cttgataaatcaaacatgttgtcgatccga 264  Q
    |||||||||| |||||||| ||| |  ||| ||| |||||||||||||||||||| ||||| ||  ||| ||||||||||||||||||| || |||||||    
T  11846245 atcgttgttgatgagagggctgttacaaaagctttatccaggtattcctaataccctaattcttaatatacttgataaatcaaacatgtcgtagatccga 11846146  T
Q  265 tcataattatgttc 278  Q
    ||||||| ||||||    
T  11846145 tcataatcatgttc 11846132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 28964881 - 28964958
Alignment:
Q  202 atccaggtattcctaatacctaattattgttatctt-gataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||  |||| ||||| |||||| |||||||||||||||| || |||||||||||||| ||||||    
T  28964881 atccaggtattcctaatttctaactattgatatctttgataaatcaaacatgtcgtagatccgatcataatcatgttc 28964958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 10767018 - 10766940
Alignment:
Q  202 atccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||||| ||||| ||  |||| |||||||||||||||||| || |||||| ||||||| ||||||    
T  10767018 atccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccggtcataatcatgttc 10766940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 17593429 - 17593351
Alignment:
Q  202 atccaggtattcctaatacc-taattattgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||||| ||||| ||  ||| |||||||||| |||||||| || |||||||||||||| ||||||    
T  17593429 atccaggtattcctaataccctaattcttaatattcttgataaattaaacatgtcgtagatccgatcataatcatgttc 17593351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 30051403 - 30051171
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||  || ||| |||||||||||| ||||||| ||| |||||||||||||| ||||| ||| | ||||||| |  | |||||| |||||    
T  30051403 aaactctctcttctgcccatctgaagagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgtcgctaactc--tattgtgtgtttca 30051306  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
    |||||     |||||||||  || ||   || ||||| | | |||||| ||| || ||| ||| |||||||||||||||||| ||||||| ||  ||| |    
T  30051305 gatca-----tctcctctctttggtt---attgttgtcgattagagggctgtaatgaaagctttatccaggtattcctaataccctaattcttaatatcc 30051214  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||| || |||| ||| ||||| ||||||    
T  30051213 ttgataaatcaaacatgtcgtagatctgattataatcatgttc 30051171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 34300477 - 34300587
Alignment:
Q  171 gttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccgatca 267  Q
    |||| |||||||||||||| ||| ||| ||| || ||||||||||||||||| ||||| ||  |||| || |||||||||| |||| || ||||||||||    
T  34300477 gttgctgttgagagggttgccatgaaagcttaattcaggtattcctaataccctaattcttaatatcctttataaatcaaatatgtcgtagatccgatca 34300576  T
Q  268 taattatgttc 278  Q
    |||| ||||||    
T  34300577 taatcatgttc 34300587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 253
Target Start/End: Complemental strand, 12108945 - 12108762
Alignment:
Q  68 gaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtttctcctctctgatttag 167  Q
    |||||||| ||||||| ||| ||||| | |||||||||||| ||  ||||||||||  ||||||||| ||||| |||||    ||  ||||| | || ||    
T  12108945 gaacttgaggcataaaggtaccggttaaagaagaaccaaatcagtcgccgctaacct-atgttgtgtgtttcatatcacc---tcatctctccgtttcag 12108850  T
Q  168 atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgttat-cttgataaatcaaacatgt 253  Q
    | ||||  |||| ||| ||||||||| | | |||||| ||||||||| |||||||||||| ||  ||| |||||||||||||||||||    
T  12108849 accgttcatgttcagaaggttgtcattagagcttcattcaggtattcttaatacctaattgttaatatccttgataaatcaaacatgt 12108762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 53069312 - 53069256
Alignment:
Q  89 cggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatca 145  Q
    |||||||||||||||||||| ||| ||||||||||  || |||||| ||||||||||    
T  53069312 cggttgaggaagaaccaaatcagccgccgctaaccatattttgtgtgtttcagatca 53069256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 55003718 - 55003611
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    ||||||||||| |||||| ||||| || ||| |||||||||||| ||||||| ||| || |||||   ||||||||| ||| ||||||||| |  | |||    
T  55003718 tacacgacaaa-ctctctcttctccccatctgaagagaacttgaggcataaaggtaccgattgag---gaaccaaatcagccgccgctaactc--tattg 55003625  T
Q  132 tgtatttcagatca 145  Q
    ||||||||||||||    
T  55003624 tgtatttcagatca 55003611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 28964776 - 28964811
Alignment:
Q  87 atcggttgaggaagaaccaaattagctgccgctaac 122  Q
    |||||||||||||||||||||||||| |||||||||    
T  28964776 atcggttgaggaagaaccaaattagccgccgctaac 28964811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 38152255 - 38152048
Alignment:
Q  51 ttctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtt 150  Q
    ||||| || |||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |  |||||||||||||||||||| ||||    
T  38152255 ttctccccatctaaagaaaacttgaagcataaaggtaccggttgaagaagaaccaaattagctgccgctaa-cgtatgttgtgtatttcagatcatggtt 38152157  T
Q  151 tctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-cttgataaatcaa 247  Q
    |||||            ||| |||||||||||||| |||||||||||  ||||| ||||||||||||||| ||||||| ||  |||  ||||||||||||    
T  38152156 tctcc------------atcattgttgttgagaggattgtcatcaaagtttcattcaggtattcctaataccctaattcttaatatgtttgataaatcaa 38152069  T
Q  248 acatgttgtcgatccgatcat 268  Q
    |||||| || |||| ||||||    
T  38152068 acatgtcgtagatctgatcat 38152048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 25387814 - 25387573
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  25387814 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 25387717  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| |||  | ||| ||| |||||||||||||||||| |||||||     
T  25387716 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgtttttaaagctttatccaggtattcctaataccctaattc 25387625  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  25387624 ttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 25387573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 278
Target Start/End: Original strand, 44409849 - 44410100
Alignment:
Q  31 atacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc------- 123  Q
    ||||||||||||||||||| ||||| || ||| |||||||||||| ||||||| |||  ||||||||||||||||||| ||| ||||||||||           
T  44409849 atacacgacaaaactctctcttctccccatctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagccgccgctaaccgttgatg 44409948  T
Q  124 -cgatgttgtgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc 221  Q
      | || ||| | |||||||||||     |||||||||  ||    | |||||||||||||||| || ||| ||| ||| |||||||||||||||||| |    
T  44409949 aagttgatgtttgtttcagatcac-----ctcctctctccttatcgttgttgttgttgagagggctgccataaaagctttatccaggtattcctaata-c 44410042  T
Q  222 taattattgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||||| ||| ||| ||||||||||||||||||| || |||||| ||||| ||||||||    
T  44410043 taattcttgatatccttgataaatcaaacatgtcgtagatccgttcatatttatgttc 44410100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 25381845 - 25381604
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  25381845 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 25381748  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| ||| |  ||| ||| |||||||||||||||||| |||||||     
T  25381747 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgttacaaaagctttatccaggtattcctaataccctaattc 25381656  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| |||| |||||||||||| | || |||||||||||||| ||||||    
T  25381655 ttaatatccttggtaaatcaaacatttcgtagatccgatcataatcatgttc 25381604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 31051394 - 31051634
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||||||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| ||||| |||||||||||||| ||| ||||||||| |  | |||    
T  31051394 tacacgacaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttaaggaagaaccaaatcagccgccgctaactc--tattg 31051491  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| ||| |||||||  |  |||  || |||||||||||| ||||| |||||||     
T  31051492 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgaaagggttgctacaaaagttttatccaggtattcttaataccctaattc 31051583  T
Q  228 ttgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  |||||||||||||||||||||| || ||||| |||||||| ||||||    
T  31051584 ttaatatcttgataaatcaaacatgtcgtagatccaatcataatcatgttc 31051634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 34739836 - 34740076
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    ||||||||||| |||||| ||||| |  ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  34739836 tacacgacaaa-ctctctcttctcccaatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 34739932  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattatt 229  Q
    ||| ||||||||||   ||||| |||| || ||   |||||||||| |||||||| || | | |||  || || ||||||||||||||| ||||||| ||    
T  34739933 tgtgtttcagatca--ttttct-ctctttggtt---atcgttgttgatgagagggctgccttgaaaggtttattcaggtattcctaataccctaattctt 34740026  T
Q  230 gttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
      ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  34740027 aatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 34740076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 31057894 - 31058134
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||||||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| ||||| |||||||||||||| ||  ||||||||| |  | |||    
T  31057894 tacacgacaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttaaggaagaaccaaatcagtcgccgctaactc--tattg 31057991  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||| ||||||     |||||||||  || ||   |||||||||| |||||||||||  |  |||  || ||||| |||||| ||||| |||||||     
T  31057992 tgtgttttagatca-----tctcctctctttggtt---atcgttgttgatgagagggttgctacaaaagttttatccaagtattcttaataccctaattc 31058083  T
Q  228 ttgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  |||||||||||||||||||||| || |||||||||||||| ||||||    
T  31058084 ttaatatcttgataaatcaaacatgtcgtagatccgatcataatcatgttc 31058134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 1078094 - 1078184
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| |||||||||    
T  1078094 tacacggcaatactctctcttctcaccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagcggccgctaac 1078184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 8093147 - 8093065
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  8093147 aaactctcttttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaacc 8093065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 278
Target Start/End: Original strand, 50306096 - 50306279
Alignment:
Q  89 cggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtttctcctctctgatttag--atcgttgttgttgagaggg 186  Q
    |||||||||||||||||||| ||| ||||||||| | ||  ||||| ||||||||||     ||||||||||   || |  |||||||||| ||||||||    
T  50306096 cggttgaggaagaaccaaatcagccgccgctaactctat--tgtgtgtttcagatca-----tctcctctct---ttggttatcgttgttgatgagaggg 50306185  T
Q  187 ttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
     || | | ||| ||| |||||||||||||||||| ||||||| ||  |||||||||||||||||||||| || |||||||| ||||| ||||||    
T  50306186 ctgccttgaaagctttatccaggtattcctaatagcctaattcttaatatcttgataaatcaaacatgtcgtagatccgattataatcatgttc 50306279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 24927063 - 24926980
Alignment:
Q  40 aaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    |||||||||| ||||| || ||| |||||||||||| ||||| | ||| |||||||||||||||||||| ||||||| ||||||    
T  24927063 aaaactctctcttctccccatctgaagagaacttgaggcatataggtaccggttgaggaagaaccaaatcagctgccactaacc 24926980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 12183727 - 12183653
Alignment:
Q  205 caggtattcctaatac-ctaattattgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| | |||| ||  |||||||||||||||||||||| || ||||| |||||||||||||||    
T  12183727 caggtattcctaatactcaaattcttaatatcttgataaatcaaacatgtcgtagatccaatcataattatgttc 12183653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 24964010 - 24963943
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaat 108  Q
    ||||||||| ||||| || ||| ||||| |||||| |||||||||||  |||||||||||||||||||    
T  24964010 aaactctctcttctccccatctgaagaggacttgaggcataaatgtactggttgaggaagaaccaaat 24963943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 1078236 - 1078314
Alignment:
Q  202 atccaggtattcctaatacc-taattattgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||| ||||||| ||||| ||  ||| |||| |||||||||||||| || |||||||||||||| ||||||    
T  1078236 atccaggtattcttaataccctaattcttaatattcttggtaaatcaaacatgtcgtagatccgatcataatcatgttc 1078314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 5542470 - 5542229
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  5542470 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 5542373  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattatt 229  Q
    ||| ||||||||||   | || ||||| || ||   |||||||||| |||||||| || | | ||| ||| ||| |||||||||||||| ||||||| ||    
T  5542372 tgtgtttcagatca---tctcccctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatctaggtattcctaataccctaattctt 5542279  T
Q  230 gttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
      ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  5542278 aatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttc 5542229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 32896862 - 32897103
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  32896862 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 32896959  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattatt 229  Q
    ||| ||||||||||   | ||  |||| || ||   || ||||||| ||||||||||||| | ||| ||| |||||||||||||||||| ||||||| ||    
T  32896960 tgtgtttcagatca---tctcatctctttggtt---attgttgttgatgagagggttgtcttgaaagctttatccaggtattcctaataccctaattctt 32897053  T
Q  230 gttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
      ||| |||| |||||||||||||| || |||||||||||||| ||||||    
T  32897054 aatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttc 32897103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 32890738 - 32890979
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  32890738 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 32890835  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattatt 229  Q
    ||| ||||||||||   | ||  |||| || ||   || ||||||| ||||||||||| | | ||| ||| |||||||||||||||||| ||||||| ||    
T  32890836 tgtgtttcagatca---tctcatctctttggtt---attgttgttgatgagagggttgccttgaaagctttatccaggtattcctaataccctaattctt 32890929  T
Q  230 gttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
      ||| |||| |||||||||||||| || |||||||||||||| ||||||    
T  32890930 aatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttc 32890979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 10699879 - 10700119
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| |||||||| ||| | || ||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  10699879 tacacggcaatactctctcttctctccatctgacgaaaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 10699976  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattatt 229  Q
    ||| ||||||||||   ||||  |||| || ||   |||||||||| |||||||| ||  |  |||  || |||||| ||||||||||| ||||||| ||    
T  10699977 tgtgtttcagatca---tttcctctctttggtt---atcgttgttgatgagagggctgctacaaaagttttatccagatattcctaataccctaattctt 10700070  T
Q  230 gttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
      |||||||||||||||||||||| || |||||||||||||| ||||||    
T  10700071 aatatcttgataaatcaaacatgtcgtagatccgatcataatcatgttc 10700119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 39735858 - 39735621
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||||||||||||||| ||||| || ||| ||||| |||||| ||||||||||| | ||| |||||||| ||||| ||| |||||||||||  |||||    
T  39735858 tacacgacaaaactctctcttctccccatctgaagagtacttgaggcataaatgtaccagttaaggaagaatcaaatcagccgccgctaaccc-ttgttg 39735760  T
Q  132 tgtatttcagatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaacttcatccaggtattcctaata-cctaattattg 230  Q
    | | |||||||||||     || ||||||  ||   | |||||||||||||||||||| ||| ||| || |||||||||||||| ||| |||| || ||     
T  39735759 tttgtttcagatcac-----cttctctct--tt---accgttgttgttgagagggttgccatgaaattttatccaggtattccttataccctagttctta 39735670  T
Q  231 ttatc-ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
     |||| |||||||||||||||||| || ||| | |||||||| ||||||    
T  39735669 atatctttgataaatcaaacatgtcgtagatacaatcataatcatgttc 39735621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 278
Target Start/End: Complemental strand, 42993294 - 42993073
Alignment:
Q  51 ttctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcacggtt 150  Q
    ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| | ||  ||||| ||||||||||         
T  42993294 ttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactctat--tgtgtgtttcagatca----- 42993202  T
Q  151 tctcctctctgatttag--atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatcttgataaatca 246  Q
    ||||||||||   || |  |||||||||| ||||||||| |  |  ||| ||| ||| |||||||||||||||| ||||| ||  |||||||||||||||    
T  42993201 tctcctctct---ttggttatcgttgttgatgagagggtggctacaaaagctttatcaaggtattcctaataccctaattcttaatatcttgataaatca 42993105  T
Q  247 aacatgttgtcgatccgatcataattatgttc 278  Q
    ||||||| || |||||||||||||| ||||||    
T  42993104 aacatgtcgtagatccgatcataatcatgttc 42993073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 271
Target Start/End: Original strand, 36818830 - 36819054
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| | |||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| | ||  ||||| |||||    
T  36818830 aaactctctcttctccccatctgatgagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactctat--tgtgtgtttca 36818927  T
Q  141 gatcacggtttctcctctctgatttag--atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacc-taattattgttatct 236  Q
    |||||     ||||||||||   || |  |||||||||| ||||||||  |  |  ||| ||| |||||||||||||||||||| ||||| ||  |||||    
T  36818928 gatca-----tctcctctct---ttggttatcgttgttgatgagagggcggctacaaaagctttatccaggtattcctaataccctaattcttaatatct 36819019  T
Q  237 tgataaatcaaacatgttgtcgatccgatcataat 271  Q
    ||||||||||||||||| || ||||||||||||||    
T  36819020 tgataaatcaaacatgtcgtagatccgatcataat 36819054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 271
Target Start/End: Original strand, 10705687 - 10705920
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||||||| ||||||| ||||| || ||| |||||||||| |  |||||| ||| |||||||||||||| ||||| ||| ||||||||| |  | |||    
T  10705687 tacacgacaatactctctcttctccccatctgaagagaacttaagccataaaggtaccggttgaggaagaatcaaatcagccgccgctaactc--tattg 10705784  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| ||  |  ||| ||| ||||||||| |||||||| |||||||     
T  10705785 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgctacaaaagctttatccaggtaatcctaataccctaattc 10705876  T
Q  228 ttgttatcttgataaatcaaacatgttgtcgatccgatcataat 271  Q
    ||  |||||||||||||||||||||| || ||||||||||||||    
T  10705877 ttaatatcttgataaatcaaacatgtcgtagatccgatcataat 10705920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 42033659 - 42033741
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    ||||||||| |||||||| ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  42033659 aaactctctcttctctccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaacc 42033741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 14417799 - 14418031
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||  |  | |||||| |||||    
T  14417799 aaactctctcttctccccatctgaagagaacttgaggcataaacgtaccggttgaggaagaaccaaatcagccgccgctaaaac--tattgtgtgtttca 14417896  T
Q  141 gatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-ctt 237  Q
    |||||    |||| |||| || ||   ||||| |||| | |||||| ||  || ||| ||| |||||||||||||||||| ||||||| ||  ||| |||    
T  14417897 gatca--tcttct-ctctttggtt---atcgtcgttgattagagggctgctatgaaagctttatccaggtattcctaataccctaattcttaatatcctt 14417990  T
Q  238 gataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| || |||||||||||||| ||||||    
T  14417991 gataaatcaaacatgtcgtagatccgatcataatcatgttc 14418031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 39727618 - 39727526
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaaccc 124  Q
    ||||| |||||||||||| ||||| || ||| ||||| |||||| ||||||| ||| |||||||||||||||||||| ||| |||||||||||    
T  39727618 tacacaacaaaactctctcttctccccatctcaagagtacttgaggcataaaggtaccggttgaggaagaaccaaatcagcagccgctaaccc 39727526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 22219897 - 22219786
Alignment:
Q  171 gttgttgttgagagggttgtcatcaaa-cttca-tccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccgatc 266  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||||||| ||||| ||  |||| |||||||||||||||||| || |||||||||    
T  22219897 gttgttgttgagagggctgccatcaaagcttcaatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatc 22219798  T
Q  267 ataattatgttc 278  Q
    ||||| ||||||    
T  22219797 ataatcatgttc 22219786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 14799562 - 14799485
Alignment:
Q  202 atccaggtattcctaatacc-taattattgttatcttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||||||| ||||| ||  |||||||||||||||||||||| || |||||||||||||| ||||||    
T  14799562 atccaggtattcctaataccctaattcttaatatcttgataaatcaaacatgtcgtagatccgatcataatcatgttc 14799485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 22220037 - 22219947
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||| |||||    
T  22220037 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccactaac 22219947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 1171361 - 1171410
Alignment:
Q  204 ccaggtattcctaatacctaattattgttatcttgataaatcaaacatgt 253  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  1171361 ccaggtattcctaatacctaattcttgttatcttgataaatcaaatatgt 1171410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 1883120 - 1883038
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacc 123  Q
    ||||| ||| ||||| || ||| ||||||||||||  |||||| |||  ||||||||||||||||||||||| ||||||||||    
T  1883120 aaactttctcttctccccatctgaagagaacttgagacataaaggtactggttgaggaagaaccaaattagccgccgctaacc 1883038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 9935142 - 9935217
Alignment:
Q  46 ctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaa 121  Q
    |||| ||||| || ||| |||||||||||| ||||||| ||| || ||||||||||||||||| ||| ||||||||    
T  9935142 ctctcttctccccatctgaagagaacttgaggcataaaggtaccgattgaggaagaaccaaatcagccgccgctaa 9935217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 9935291 - 9935362
Alignment:
Q  202 atccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccgatcataat 271  Q
    |||||||||||||||||||| ||||| ||  |||| |||||||||||||||||| || ||||||||||||||    
T  9935291 atccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataat 9935362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 7771210 - 7771322
Alignment:
Q  168 atcgttgttgttgagagggttgtcatcaaacttcatccaggtattcctaatacc-taattattgttatc-ttgataaatcaaacatgttgtcgatccgat 265  Q
    |||||||||| |||||||||||  |  |||  | |||||||||||| ||||||| ||||| ||  |||| ||| |||||||||||||| || ||||||||    
T  7771210 atcgttgttgatgagagggttgctacaaaagcttatccaggtattcttaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgat 7771309  T
Q  266 cataattatgttc 278  Q
    |||||| ||||||    
T  7771310 cataatcatgttc 7771322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 1171252 - 1171308
Alignment:
Q  89 cggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatcac 146  Q
    |||||||||||||||||||| ||| |||||||| ||| |||||| | |||||||||||    
T  1171252 cggttgaggaagaaccaaatcagccgccgctaa-ccgttgttgtttgtttcagatcac 1171308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 38402 - 38518
Alignment:
Q  163 tttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaatacctaattattgtta-tcttgataaatcaaacatgttgtcgat 260  Q
    |||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||  || |||||||||| |||||||||||| |||    
T  38402 tttagatcattgttgttgagatgattgtcgtcaaagcttcatccaggtattcctaatacctaattattaatattcttgataaa-caaacatgttgtagat 38500  T
Q  261 ccgatcataattatgttc 278  Q
    |||||||||| |||||||    
T  38501 ccgatcataactatgttc 38518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 6372 - 6613
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  6372 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 6469  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| |||||||     
T  6470 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagagggctgccttgaaagctttatccaggtattcctaatagcctaattc 6561  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| |||||||||||||||||||||| ||| |  ||||||| ||||||    
T  6562 ttaatatccttgataaatcaaacatgttgtagattcagtcataatcatgttc 6613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 12245 - 12486
Alignment:
Q  32 tacacgacaaaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttg 131  Q
    |||||| ||| ||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||| |  | |||    
T  12245 tacacggcaatactctctcttctccccatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaactc--tattg 12342  T
Q  132 tgtatttcagatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaatta 227  Q
    ||| ||||||||||     |||||||||  || ||   |||||||||| |||||||  || | | ||| ||| |||||| ||||||||||| |||||||     
T  12343 tgtgtttcagatca-----tctcctctctttggtt---atcgttgttgatgagaggactgccttgaaagctttatccagatattcctaatagcctaattc 12434  T
Q  228 ttgttat-cttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||  ||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  12435 ttaatatccttgataaatcaaacatgtcgtagattcgatcataattatgttc 12486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 1495 - 1263
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||||||| ||||||||||| |||||||| ||  ||||||||| |  | |||||| |||||    
T  1495 aaactctctcttctccccatctgaagagaacttgaggcataaatgtaccggttgaggaaaaaccaaatcagtcgccgctaactc--tattgtgtgtttca 1398  T
Q  141 gatcacggtttctcctctc--tgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-c 235  Q
    |||||     |||||||||  || ||   |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| ||||||| ||  ||| |    
T  1397 gatca-----tctcctctctttggtt---atcgttgttgatgagagggatgccttgaaagctttatccaggtattcctaataccctaattcttaatatcc 1306  T
Q  236 ttgataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| | || |||||||||||||| ||||||    
T  1305 ttgataaatcaaacatatcgtagatccgatcataatcatgttc 1263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 920 - 688
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttca 140  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||  |  | |||||| |||||    
T  920 aaactctctcttctccccatctgaagagaacttgaggcataaacgtaccggttgaggaagaaccaaatcagccgccgctaaaac--tattgtgtgtttca 823  T
Q  141 gatcacggtttctcctctctgatttagatcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttat-ctt 237  Q
    |||||    |||| |||| || ||   ||||| |||| | |||||| ||  || ||| ||| |||||||||||||||||| ||||||| ||  ||| |||    
T  822 gatca--tcttct-ctctttggtt---atcgtcgttgattagagggctgctatgaaagctttatccaggtattcctaataccctaattcttaatatcctt 729  T
Q  238 gataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    |||||||||||||||| || |||||||||||||| ||||||    
T  728 gataaatcaaacatgtcgtagatccgatcataatcatgttc 688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 5825 - 5895
Alignment:
Q  63 aaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtg 133  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||||||||  | ||||||||| ||||||||    
T  5825 aaagataacttgaggcataaatgtaccggttgaggaagaaccaaattagtcgtcgctaaccctatgttgtg 5895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 5945 - 6013
Alignment:
Q  211 ttcctaatacctaattattgttatctt-gataaatcaaacatgttgtcgatccgatcataattatgttc 278  Q
    ||||||||||||||||| |  ||| || |||||||||||||||| || |||||||||||| | ||||||    
T  5945 ttcctaatacctaattaataatatttttgataaatcaaacatgtcgtagatccgatcatattcatgttc 6013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 5512 - 5625
Alignment:
Q  168 atcgttgttgttgagagggttgtcatcaaa-cttcatccaggtattcctaata-cctaattattgttatc-ttgataaatcaaacatgttgtcgatccga 264  Q
    |||||||||| |||||||| || | | ||| ||| |||||||||||||||||| ||||||| ||  |||| |||||||||||||||||| || |||||||    
T  5512 atcgttgttgatgagagggctgccttgaaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccga 5611  T
Q  265 tcataattatgttc 278  Q
    ||||||| ||||||    
T  5612 tcataatcatgttc 5625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 173191 - 173110
Alignment:
Q  41 aaactctctattctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaac 122  Q
    ||||||||| ||||| || ||| |||||||||||| ||||||| |||  ||||||||||||||||||| ||| |||||||||    
T  173191 aaactctctcttctccccatctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagccgccgctaac 173110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 952 - 1025
Alignment:
Q  51 ttctctccgtctaaagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaaccc 124  Q
    ||||| || ||| |||||||||||| |||||||  || |||||||||||||||||||| ||| ||| |||||||    
T  952 ttctccccatctgaagagaacttgaggcataaagataacggttgaggaagaaccaaatcagccgccactaaccc 1025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 1255 - 1334
Alignment:
Q  64 aagagaacttgaagcataaatgtatcggttgaggaagaaccaaattagctgccgctaacccgatgttgtgtatttcagatc 144  Q
    ||||||||||||| |||||||||| || || |||||||||||||  ||  ||||||||||| ||||||| | |||||||||    
T  1255 aagagaacttgaaacataaatgtaccgattaaggaagaaccaaa-aagtcgccgctaaccctatgttgtatgtttcagatc 1334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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