View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_high_48 (Length: 245)
Name: NF16124_high_48
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 40375778 - 40375551
Alignment:
| Q |
3 |
aattcaaaccttcacatatatata--attcaattttgttaccaattgatccatgttttccaggactaatgaaaaagttattaactccattcatcccacaa |
100 |
Q |
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|||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
40375778 |
aattcaaacctttacatatatatataatgcaatgttgttaccaattgatccatgttttccggaactaatgaaaaagttattaactccattcatcccacaa |
40375679 |
T |
|
| Q |
101 |
tataagtcattctagttaaaaagttatgtcaccttttacataatttccaatataa-aaaatattaattttattttccctattatagtctgactgtttttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40375678 |
tataagtcattctagttaaaaagttatgtcaccttttacatattttccaatataaaaaaatattaattttattttccctat--tagtctgactgtttttt |
40375581 |
T |
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| Q |
200 |
actttctcttattctcaaactctcataatt |
229 |
Q |
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|||||||||||||||| ||||||||||||| |
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| T |
40375580 |
actttctcttattctcgaactctcataatt |
40375551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 40374165 - 40374040
Alignment:
| Q |
103 |
taagtcattctagttaaaaagttatgtcaccttttacataatttccaatataa-aaaatattaattttattttccctattatagtctgactgttttttac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40374165 |
taagtcattctagttaaaaagttatgtcaccttttacatattttccaatataagaaaatattaattttattttccctat--tagtctgactgttttttac |
40374068 |
T |
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| Q |
202 |
tttctcttattctcaaactctcataatt |
229 |
Q |
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|||||||||||||| ||||||||||||| |
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| T |
40374067 |
tttctcttattctcgaactctcataatt |
40374040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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