View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16124_high_5 (Length: 611)

Name: NF16124_high_5
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16124_high_5
NF16124_high_5
[»] chr3 (6 HSPs)
chr3 (13-335)||(44892855-44893177)
chr3 (367-593)||(44892606-44892832)
chr3 (457-593)||(44901259-44901395)
chr3 (166-281)||(44918418-44918533)
chr3 (131-197)||(44901980-44902044)
chr3 (452-586)||(44918016-44918150)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 44893177 - 44892855
Alignment:
Q  13 agcagagagaatacagtataattgaaacatactttttagtttagattcaacattcaaccgtgaaacaattactcccatatagtagtgggataaaagtgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44893177 agcagagagaatacagtataattgaaacatactttttagtttagattcaacattcaaccgtgaaacaattactcccatatagtagtgggataaaagtgaa 44893078  T
Q  113 agaccgtctttgttcccgtcctttttgatcttcaataattaatgtttatctttctagaaattctccttgtgaaaatcaaatttgggggctctctcctgag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44893077 agaccgtctttgttcccgtcctttttgatcttcaataattaatgtttatctttctagaaattctccttgtgaaaatcaaatttgggggctctctcctgag 44892978  T
Q  213 aaaattccaaagctaacccacgaagttctttaataggtgccggtgctccacagtaaaacactcctgcatattgaaataggttcagatcttcaataacgat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44892977 aaaattccaaagctaacccacgaagttctttaataggtgccggtgctccacagtaaaacactcctgcatattgaaataggttcagatcttcaataacgat 44892878  T
Q  313 ttcagtgcattcaatgaatactc 335  Q
    |||||||||||||||||||||||    
T  44892877 ttcagtgcattcaatgaatactc 44892855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 367 - 593
Target Start/End: Complemental strand, 44892832 - 44892606
Alignment:
Q  367 cgtagcacaataagttgacgaaatcacaatggtacagtgataatggaaactctaaaatgttgactttgttatgtcaaatgagcacgaagaataggaactc 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44892832 cgtagcacaataagttgacgaaatcacaatggtacagtgataatggaaactctaaaatgttgactttgttatgtcaaatgagcacgaagaataggaactc 44892733  T
Q  467 accaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttccatttaagata 566  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44892732 accaatgcgtttttgtggatgattatttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttccatttaagata 44892633  T
Q  567 tccaaaccttttttagcatggtttagt 593  Q
    |||||||||| ||||||||||||||||    
T  44892632 tccaaaccttctttagcatggtttagt 44892606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 457 - 593
Target Start/End: Complemental strand, 44901395 - 44901259
Alignment:
Q  457 ataggaactcaccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttcc 556  Q
    ||||||||||||||||||||||||||||||||||   |||||| |  |||||||| |||| ||| || ||||  ||||||| ||||  || |||||||||    
T  44901395 ataggaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcaccattttggtctagcaaagtgagacttgacgggtgttcc 44901296  T
Q  557 atttaagatatccaaaccttttttagcatggtttagt 593  Q
    | | |||||||||| ||| ||||||||||||||||||    
T  44901295 agtcaagatatccacaccatttttagcatggtttagt 44901259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 44918533 - 44918418
Alignment:
Q  166 ctagaaattctccttgtgaaaatcaaatttgggggctctctcctgagaaaattccaaagctaacccacgaagttctttaataggtgccggtgctccacag 265  Q
    |||||||||||||||||| |||||| |||||| || | | |  |||||||| ||| || ||||   |||||| |||||| || |||| ||||  ||||||    
T  44918533 ctagaaattctccttgtggaaatcatatttggtggttgtgttgtgagaaaagtccgaacctaattgacgaagctctttagtaagtgcaggtggcccacag 44918434  T
Q  266 taaaacactcctgcat 281  Q
    |||||||| |||||||    
T  44918433 taaaacacccctgcat 44918418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 44902044 - 44901980
Alignment:
Q  131 tcctttttgatcttcaataattaatgtttatctttctagaaattctccttgtgaaaatcaaatttgg 197  Q
    ||||||||| ||||||| ||| |||||  |||| ||||||||||||||||||| |||||||||||||    
T  44902044 tcctttttg-tcttcaacaat-aatgtccatctgtctagaaattctccttgtggaaatcaaatttgg 44901980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 586
Target Start/End: Complemental strand, 44918150 - 44918016
Alignment:
Q  452 gaagaataggaactcaccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggt 551  Q
    |||||||  ||||||||||| |||| |||||||||||||   |||||| |  ||||||||||| |||||||| |||   ||||||| ||||  || | ||    
T  44918150 gaagaatgagaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgt 44918051  T
Q  552 gttccatttaagatatccaaaccttttttagcatg 586  Q
    ||||||   | |||||||| ||| |||||||||||    
T  44918050 gttccagagacgatatccacaccatttttagcatg 44918016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University