View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16124_high_50 (Length: 239)

Name: NF16124_high_50
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16124_high_50
NF16124_high_50
[»] chr2 (16 HSPs)
chr2 (1-224)||(29833282-29833505)
chr2 (1-139)||(35090597-35090734)
chr2 (1-138)||(13456174-13456311)
chr2 (1-141)||(31002451-31002592)
chr2 (1-101)||(13149671-13149771)
chr2 (1-103)||(28682928-28683030)
chr2 (1-103)||(13462115-13462217)
chr2 (1-97)||(35084665-35084761)
chr2 (1-103)||(30965402-30965505)
chr2 (1-103)||(31008429-31008532)
chr2 (1-103)||(36750489-36750591)
chr2 (1-103)||(35438693-35438794)
chr2 (3-103)||(11048536-11048636)
chr2 (1-104)||(44716786-44716890)
chr2 (15-116)||(1387990-1388090)
chr2 (12-75)||(23343646-23343709)
[»] chr8 (21 HSPs)
chr8 (1-140)||(32890963-32891102)
chr8 (1-140)||(42992950-42993089)
chr8 (1-103)||(32897087-32897189)
chr8 (1-104)||(7771306-7771409)
chr8 (1-103)||(14799399-14799501)
chr8 (1-103)||(5542143-5542245)
chr8 (1-103)||(9935353-9935455)
chr8 (3-104)||(10705919-10706021)
chr8 (1-103)||(36819045-36819147)
chr8 (1-103)||(14418015-14418114)
chr8 (12-112)||(1882725-1882826)
chr8 (3-117)||(39735517-39735635)
chr8 (1-97)||(24250177-24250272)
chr8 (2-104)||(39727299-39727404)
chr8 (82-140)||(31373513-31373570)
chr8 (1-96)||(22219706-22219802)
chr8 (6-78)||(31379430-31379502)
chr8 (54-138)||(10700136-10700222)
chr8 (4-76)||(31399047-31399119)
chr8 (22-98)||(1171418-1171493)
chr8 (82-138)||(31398952-31399007)
[»] chr5 (17 HSPs)
chr5 (1-140)||(28531428-28531567)
chr5 (1-138)||(12692229-12692366)
chr5 (3-140)||(32096906-32097044)
chr5 (1-103)||(28525369-28525471)
chr5 (1-103)||(7389531-7389633)
chr5 (1-103)||(41297351-41297453)
chr5 (1-103)||(12686162-12686264)
chr5 (1-117)||(24054409-24054526)
chr5 (3-103)||(16215157-16215257)
chr5 (3-103)||(32094142-32094243)
chr5 (1-79)||(30384385-30384463)
chr5 (22-140)||(19066053-19066171)
chr5 (3-93)||(26509926-26510013)
chr5 (1-79)||(14610223-14610301)
chr5 (3-96)||(26316782-26316875)
chr5 (1-106)||(30772357-30772463)
chr5 (12-104)||(19059746-19059838)
[»] chr3 (24 HSPs)
chr3 (1-140)||(49151686-49151825)
chr3 (1-138)||(10244282-10244419)
chr3 (1-138)||(42197110-42197247)
chr3 (1-133)||(11846016-11846148)
chr3 (1-138)||(38455500-38455635)
chr3 (4-139)||(10766818-10766953)
chr3 (1-103)||(49157753-49157855)
chr3 (1-103)||(11839708-11839810)
chr3 (1-104)||(42191202-42191305)
chr3 (2-103)||(10238195-10238296)
chr3 (6-97)||(30051091-30051182)
chr3 (1-103)||(10760633-10760735)
chr3 (1-103)||(48128030-48128132)
chr3 (1-98)||(55003400-55003497)
chr3 (1-103)||(38449048-38449148)
chr3 (1-103)||(8331861-8331963)
chr3 (1-97)||(53069043-53069139)
chr3 (1-103)||(17055775-17055878)
chr3 (1-104)||(28964942-28965043)
chr3 (1-117)||(17593250-17593367)
chr3 (22-103)||(13445146-13445227)
chr3 (1-93)||(46656758-46656850)
chr3 (3-105)||(24643532-24643635)
chr3 (1-39)||(34300571-34300609)
[»] chr7 (16 HSPs)
chr7 (1-141)||(3817256-3817396)
chr7 (1-139)||(339445-339583)
chr7 (1-103)||(3811152-3811254)
chr7 (1-104)||(42767276-42767380)
chr7 (1-104)||(351860-351963)
chr7 (1-103)||(28420942-28421044)
chr7 (1-104)||(20239025-20239128)
chr7 (12-104)||(12804085-12804177)
chr7 (3-97)||(5979162-5979257)
chr7 (1-94)||(35147996-35148089)
chr7 (1-84)||(43540059-43540142)
chr7 (2-140)||(26381144-26381280)
chr7 (4-97)||(5849602-5849696)
chr7 (1-75)||(26383700-26383774)
chr7 (94-140)||(30219220-30219266)
chr7 (65-140)||(18656696-18656771)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-140)||(172836-172975)
[»] chr6 (18 HSPs)
chr6 (1-140)||(8662727-8662866)
chr6 (1-108)||(21782731-21782838)
chr6 (4-138)||(21196969-21197103)
chr6 (1-103)||(4580304-4580406)
chr6 (1-103)||(32035269-32035371)
chr6 (1-97)||(8650792-8650888)
chr6 (1-103)||(21190849-21190951)
chr6 (1-140)||(25343698-25343842)
chr6 (1-104)||(18778657-18778761)
chr6 (1-103)||(25354285-25354388)
chr6 (6-98)||(17581705-17581797)
chr6 (1-103)||(31756196-31756300)
chr6 (4-97)||(21770546-21770640)
chr6 (1-79)||(34603338-34603415)
chr6 (1-79)||(34724615-34724692)
chr6 (4-45)||(21783350-21783391)
chr6 (4-45)||(21789573-21789614)
chr6 (12-136)||(6098062-6098191)
[»] chr1 (14 HSPs)
chr1 (1-138)||(25387452-25387589)
chr1 (3-139)||(31051620-31051761)
chr1 (1-104)||(31058118-31058221)
chr1 (1-104)||(1078298-1078401)
chr1 (1-103)||(25381518-25381620)
chr1 (1-103)||(27955235-27955336)
chr1 (1-103)||(50306263-50306365)
chr1 (1-98)||(34740060-34740157)
chr1 (12-138)||(38151923-38152049)
chr1 (4-103)||(44410087-44410186)
chr1 (12-130)||(24963657-24963776)
chr1 (3-103)||(12183562-12183667)
chr1 (12-97)||(24926744-24926828)
chr1 (1-70)||(8092862-8092931)
[»] chr4 (20 HSPs)
chr4 (4-135)||(26963292-26963423)
chr4 (1-138)||(24288061-24288196)
chr4 (1-139)||(48161033-48161168)
chr4 (1-140)||(49976661-49976800)
chr4 (1-138)||(10739286-10739424)
chr4 (1-138)||(10953055-10953193)
chr4 (1-104)||(6257187-6257290)
chr4 (1-103)||(33458249-33458352)
chr4 (4-103)||(26956812-26956911)
chr4 (1-95)||(10733237-10733331)
chr4 (1-95)||(10947006-10947100)
chr4 (1-103)||(50168667-50168769)
chr4 (4-101)||(34308057-34308153)
chr4 (12-104)||(4632872-4632964)
chr4 (1-103)||(48167252-48167351)
chr4 (3-102)||(55473129-55473225)
chr4 (1-73)||(19686341-19686413)
chr4 (25-141)||(50156043-50156161)
chr4 (1-70)||(3769641-3769710)
chr4 (5-45)||(33461434-33461474)
[»] scaffold0208 (2 HSPs)
scaffold0208 (4-138)||(6600-6734)
scaffold0208 (1-104)||(12470-12573)
[»] scaffold0236 (1 HSPs)
scaffold0236 (1-104)||(5609-5712)
[»] scaffold0363 (1 HSPs)
scaffold0363 (1-103)||(605-704)
[»] scaffold0440 (1 HSPs)
scaffold0440 (1-103)||(1176-1279)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-98)||(38502-38599)
[»] scaffold1114 (1 HSPs)
scaffold1114 (24-103)||(1182-1261)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29833282 - 29833505
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  29833282 cgatcataattatgttcaatattttatttgtttccgttattgattcacaattattaaacatgtattatgaaatctctttatatttatacctaaatttcta 29833381  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattggatcatgaaccttatctatatgaaccctaaattatataatttgggtttgttattttgtttt 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833382 acaagtagtatcagagcagtcttcatgtttgatttattggatcatgaaccttatctatatgaaccctaaattatataatttgggtttgttattttgtttt 29833481  T
Q  201 aatttgttcgctgcatataagatt 224  Q
    ||||||||||||||||||||||||    
T  29833482 aatttgttcgctgcatataagatt 29833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 35090734 - 35090597
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||| ||||||||||||| |    
T  35090734 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttc-a 35090636  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattg 139  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  35090635 acaagtggtatcagagcggtcttcatgtttgatttattg 35090597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 13456174 - 13456311
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| ||||||| ||||| |    
T  13456174 cgatcataatcaggttcaatgttttgtttgcttccgctattgattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttcca 13456273  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttatt 138  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  13456274 acaagtggtatcagagcggtcttcatgtttgatttatt 13456311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31002451 - 31002592
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||||| | ||| |||||||||||||     
T  31002451 cgatcataatcatgttcaatattttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttcc 31002550  T
Q  100 aacaagtagtatcagagccgtcttcatgtttgatttattgga 141  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  31002551 aacaagtggtatcagagcggtcttcatgtttgatttattgga 31002592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13149771 - 13149671
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  13149771 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcta 13149672  T
Q  101 a 101  Q
    |    
T  13149671 a 13149671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28683030 - 28682928
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||| ||||||||||||| |    
T  28683030 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttcca 28682931  T
Q  101 aca 103  Q
    |||    
T  28682930 aca 28682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 13462115 - 13462217
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| ||||||| ||||| |    
T  13462115 cgatcataatcaggttcaatgttttgtttgcttccgctattgattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttcca 13462214  T
Q  101 aca 103  Q
    |||    
T  13462215 aca 13462217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35084761 - 35084665
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaattt 97  Q
    |||||||||| || |||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||| ||||||||||||    
T  35084761 cgatcataatcattttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaattt 35084665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30965402 - 30965505
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |  ||| || ||||||||||||||||||||||| | ||| ||||||||||||||    
T  30965402 cgatcataatcatgttcaatattttgtttgcttccgctattgatttatgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttct 30965501  T
Q  100 aaca 103  Q
    ||||    
T  30965502 aaca 30965505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31008429 - 31008532
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||||| | ||| |||||||||||||     
T  31008429 cgatcataatcatgttcaatattttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttcc 31008528  T
Q  100 aaca 103  Q
    ||||    
T  31008529 aaca 31008532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 36750489 - 36750591
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| ||||||||||||||| |||| |||| |||||||| |    
T  36750489 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttttattaagacttaaatttcca 36750588  T
Q  101 aca 103  Q
    |||    
T  36750589 aca 36750591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 35438794 - 35438693
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||| || | || ||||||| ||||||||| ||||| |||| || |||||||||| |    
T  35438794 cgatcataatcatgttcaatgttttatttgcttccgctattgattcataactgttgaacatgttttatgaaatttgttt-tattaaggcctaaatttcca 35438696  T
Q  101 aca 103  Q
    |||    
T  35438695 aca 35438693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 11048636 - 11048536
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaac 102  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||| |||| ||  |||||| ||||||||| | ||| || | ||||||||||||| |||    
T  11048636 atcataatcatgttcaatgttttgtttgcttcagctattgattcataattgttggacatgttttatgaaatttatttttaataagacctaaatttccaac 11048537  T
Q  103 a 103  Q
    |    
T  11048536 a 11048536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 44716890 - 44716786
Alignment:
Q  1 cgatcataattatgttcaatattttgttt-gcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttct 99  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||||| | ||   || ||||||| |||||| |||||||| |||| ||||||||||||||    
T  44716890 cgatcataatcatgttcaatgttttcttttgcttccgctattgattgataaccgttgaacatgttttatgatatctgtttttattaagacctaaatttct 44716791  T
Q  100 aacaa 104  Q
    |||||    
T  44716790 aacaa 44716786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 1388090 - 1387990
Alignment:
Q  15 ttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaacaagtagtatcag 114  Q
    |||||| ||||||||| ||||| |||||||||| ||||||| || |||| ||||||| | | ||| ||||| |||||||||||  ||||| |||||| ||    
T  1388090 ttcaatgttttgtttgtttccgttattgattcataattattgaa-atgttttatgaagtatatttttattttgacctaaatttacaacaaatagtattag 1387992  T
Q  115 ag 116  Q
    ||    
T  1387991 ag 1387990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 23343646 - 23343709
Alignment:
Q  12 atgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatct 75  Q
    ||||||||| ||||||||||||||||| |||||||  |||  || ||||||| |||||||||||    
T  23343646 atgttcaatgttttgtttgcttccgctgttgattcgtaatcgttgaacatgttttatgaaatct 23343709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 32890963 - 32891102
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  32890963 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 32891062  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  32891063 acaagtggtatcagagcggtcttcatgtttgatttattgg 32891102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 42993089 - 42992950
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| | ||| |||||||||||||     
T  42993089 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttcc 42992990  T
Q  100 aacaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    | ||||| |||||||||||  ||||||||||||||||||||    
T  42992989 atcaagtggtatcagagcc-acttcatgtttgatttattgg 42992950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32897087 - 32897189
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  32897087 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 32897186  T
Q  101 aca 103  Q
    |||    
T  32897187 aca 32897189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 7771306 - 7771409
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  7771306 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 7771405  T
Q  101 acaa 104  Q
    ||||    
T  7771406 acaa 7771409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 14799501 - 14799399
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||| ||||||||||||| |    
T  14799501 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatttgtttatattaagacctaaatttcca 14799402  T
Q  101 aca 103  Q
    |||    
T  14799401 aca 14799399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 5542245 - 5542143
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||||| |||||| |||||||| | ||||||||||| |    
T  5542245 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattataaaatctatttatattaaaacctaaatttcca 5542146  T
Q  101 aca 103  Q
    |||    
T  5542145 aca 5542143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9935353 - 9935455
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| || |||||| |||||||||||||||||||||||||| |||| || ||||||| ||||||||||||||| |||| ||||||||||||| |    
T  9935353 cgatcataatcatattcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttttattaagacctaaatttcca 9935452  T
Q  101 aca 103  Q
    |||    
T  9935453 aca 9935455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 10705919 - 10706021
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttctaa 101  Q
    |||||||| ||||||||| |||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||| | ||| ||||||||||||| ||    
T  10705919 atcataatcatgttcaatgttttgtttgcttacgctattgatttacgattgttaaacatgtattatgaaatctgtttttaattaagacctaaatttccaa 10706018  T
Q  102 caa 104  Q
    |||    
T  10706019 caa 10706021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 36819045 - 36819147
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| || |||||| |||||||||||||| ||||||||||| |||| || |||||||||||||| || |||||||||| ||||||||||||| |    
T  36819045 cgatcataatcatattcaatgttttgtttgcttccactattgattcataattgttgaacatgtattatgagatttgtttatattaagacctaaatttcca 36819144  T
Q  101 aca 103  Q
    |||    
T  36819145 aca 36819147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 14418015 - 14418114
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||   ||  |||||||||| ||||||||||||||| |||| ||||||||||||| |    
T  14418015 cgatcataatcatgttcaatgttttgtttgcttccgctattgattc---atagttaaacatgttttatgaaatctgtttttattaagacctaaatttcca 14418111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 1882826 - 1882725
Alignment:
Q  12 atgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctg-tttatatttagacctaaatttctaacaagtagta 110  Q
    ||||||||| |||||||||||||||||||||||||  |||| || |||||||  ||||||||||| |||||||| ||||||||||||| ||||||| |||    
T  1882826 atgttcaatgttttgtttgcttccgctattgattcttaattgttgaacatgttctatgaaatctgttttatattaagacctaaatttccaacaagtggta 1882727  T
Q  111 tc 112  Q
    ||    
T  1882726 tc 1882725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 39735635 - 39735517
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatt----tagacctaaatttc 98  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||| |||| || ||||||| ||||||||||| ||| ||||     | |||||||||||    
T  39735635 atcataatcatgttcaatattttatttacttccgctattgattcataattgttgaacatgttttatgaaatctatttttattattaaaaacctaaatttc 39735536  T
Q  99 taacaagtagtatcagagc 117  Q
     ||||||| ||||||||||    
T  39735535 caacaagtggtatcagagc 39735517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24250177 - 24250272
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaattt 97  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||| | || || ||||||| ||||||||| ||||| | || ||||||||||||    
T  24250177 cgatcataataatgttcaatattttgtttgtttccgctattgattcatatttgttcaacatgttttatgaaatatgttt-ttttaagacctaaattt 24250272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 39727404 - 39727299
Alignment:
Q  2 gatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgttt---atatttagacctaaatttc 98  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||| |||| || ||||||| ||||||||||| |||    |||| |||||||||||||    
T  39727404 gatcataatcatgttcaatgttttgtttgcttccgttattgattcataattgttgaacatgttttatgaaatctatttttattattaagacctaaatttc 39727305  T
Q  99 taacaa 104  Q
     |||||    
T  39727304 caacaa 39727299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 31373570 - 31373513
Alignment:
Q  82 atttagacctaaatttctaacaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    |||||||||||| |||||||||||| |||||||| | ||||||||||||||||||||||    
T  31373570 atttagacctaa-tttctaacaagtggtatcagaacggtcttcatgtttgatttattgg 31373513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 22219802 - 22219706
Alignment:
Q  1 cgatcataattatgttcaatattttgtttg-cttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatt 96  Q
    |||||||||| ||||||||  |||| |||  |||| |||||||||||| || |||| ||||||| ||||||||||| ||| |||| |||||||||||    
T  22219802 cgatcataatcatgttcaaagttttctttttcttctgctattgattcataactattgaacatgttttatgaaatctctttttattaagacctaaatt 22219706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 31379502 - 31379430
Alignment:
Q  6 ataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtt 78  Q
    ||||| ||||||||| |||| ||||| ||||  ||||||||| ||||||||||||||| ||||||||| ||||    
T  31379502 ataatcatgttcaatgttttatttgcctccgtcattgattcataattattaaacatgtgttatgaaatttgtt 31379430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 10700136 - 10700222
Alignment:
Q  54 ttaaacatgtattatgaaatctgtttat-atttagacctaaatttctaacaagtagtatcagagc-cgtcttcatgtttgatttatt 138  Q
    |||||||||||||||||||| ||||| | ||| ||||||||||||| ||||||| |||||||  |  ||| ||||||||||||||||    
T  10700136 ttaaacatgtattatgaaatatgtttttaattaagacctaaatttccaacaagtggtatcagctcgggtcatcatgtttgatttatt 10700222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 31399119 - 31399047
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctg 76  Q
    ||||||| ||||||||| | |||||||| ||| ||||||||||| ||||||| ||||| | |||| |||||||    
T  31399119 tcataatcatgttcaatgtattgtttgcctccactattgattcataattattgaacatatgttattaaatctg 31399047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 1171418 - 1171493
Alignment:
Q  22 ttttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttc 98  Q
    ||||||||||||||||  |||| ||| |||| || || |||| | ||||||||||||| |||| |||||||||||||    
T  1171418 ttttgtttgcttccgcggttgaatcataattgttgaatatgtttcatgaaatctgttt-tattaagacctaaatttc 1171493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 31399007 - 31398952
Alignment:
Q  82 atttagacctaaatttctaacaagtagtatcagagccgtcttcatgtttgatttatt 138  Q
    |||||||||||| |||||||||||| |||||| | | ||||| ||||||||||||||    
T  31399007 atttagacctaa-tttctaacaagtggtatcaaaacggtctttatgtttgatttatt 31398952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 28531567 - 28531428
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  28531567 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 28531468  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  28531467 acaagtggtatcagagcggtcttcatgtttgatttattgg 28531428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 12692366 - 12692229
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || ||||||| |||||||||||||||||||  ||| ||||||||| |    
T  12692366 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttcca 12692267  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttatt 138  Q
    |||||| |||||||||||||||||||||||||||||||    
T  12692266 acaagtggtatcagagccgtcttcatgtttgatttatt 12692229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 32097044 - 32096906
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttctaa 101  Q
    |||||||| ||||||||| |||||||||||||||||||||||| || ||| || ||||||||||||||||||||||| | ||| ||||||||||||| ||    
T  32097044 atcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttccaa 32096945  T
Q  102 caagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    ||| | |||||||||| ||||||||||||||||||||||    
T  32096944 caaatggtatcagagcggtcttcatgtttgatttattgg 32096906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28525471 - 28525369
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  28525471 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 28525372  T
Q  101 aca 103  Q
    |||    
T  28525371 aca 28525369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 7389633 - 7389531
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||| ||||||||||||| |    
T  7389633 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatttgtttatattaagacctaaatttcca 7389534  T
Q  101 aca 103  Q
    |||    
T  7389533 aca 7389531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 41297351 - 41297453
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||| || ||||||||||||||||||| |||||||| ||||| ||||||| |    
T  41297351 cgatcataattatgttcaatgttttgtttgcttctgctattgattcataattgttgaacatgtattatgaaatctctttatattaagacccaaatttcca 41297450  T
Q  101 aca 103  Q
    |||    
T  41297451 aca 41297453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12686264 - 12686162
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || ||||||| |||||||||||||||||||  ||| ||||||||| |    
T  12686264 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttcca 12686165  T
Q  101 aca 103  Q
    |||    
T  12686164 aca 12686162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 24054409 - 24054526
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacct-aaatttct 99  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||| | |||| || ||||||| ||||||||||||||| |||| |||||| ||||||      
T  24054409 cgatcataatcatgttcaatgttttgtttgcttccgctatagatttataattgttgaacatgttttatgaaatctgtttttattaagacctaaaattttc 24054508  T
Q  100 aacaagtagtatcagagc 117  Q
    ||||||| ||||||||||    
T  24054509 aacaagtggtatcagagc 24054526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 16215257 - 16215157
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaac 102  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||| |||| || || |||| ||||||||||||||| |||  |||||||||||||||||    
T  16215257 atcataatcatgttaaatgttttgtttgcttccgctattgattcataattgttgaatatgtgttatgaaatctgtttttataaagacctaaatttctaac 16215158  T
Q  103 a 103  Q
    |    
T  16215157 a 16215157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 32094243 - 32094142
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttctaa 101  Q
    |||||||| ||||||||| |||||||||||||||||||||||| || ||| || |||||||||||| |||||||||| | ||| ||||||||||||| ||    
T  32094243 atcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattataaaatctgtttttaattaagacctaaatttccaa 32094144  T
Q  102 ca 103  Q
    ||    
T  32094143 ca 32094142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30384463 - 30384385
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgttt 79  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||    
T  30384463 cgatcataatcgtgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgttt 30384385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 19066171 - 19066053
Alignment:
Q  22 ttttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaacaagtagtatcagagccgtc 121  Q
    |||||||||||||||||| ||||| | |||  || ||||||  ||||||||| ||||| |||| |||| |||||||| ||| ||| |||||||||| |||    
T  19066171 ttttgtttgcttccgctaatgatttataatcgttgaacatggtttatgaaatatgtttttattaagacttaaatttccaactagtggtatcagagcggtc 19066072  T
Q  122 ttcatgtttgatttattgg 140  Q
    |||  ||||||||||||||    
T  19066071 ttcgcgtttgatttattgg 19066053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 26509926 - 26510013
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaa 93  Q
    |||||||||||||||||| |||||||||||||| ||||   |||| ||| ||| ||||||| ||||||||||||||| ||||||| |||||    
T  26509926 atcataattatgttcaatgttttgtttgcttccactat---ttcataatgattgaacatgttttatgaaatctgtttttatttaggcctaa 26510013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 14610223 - 14610301
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgttt 79  Q
    |||||||||| |||||||||  ||| ||||||||||||||| ||||| |||| || ||||||| |||||||||||||||    
T  14610223 cgatcataatcatgttcaatggtttatttgcttccgctattaattcataattgttgaacatgttttatgaaatctgttt 14610301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 26316875 - 26316782
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatt 96  Q
    |||||| | ||||||||| |||| ||||||||| ||||| ||| | ||||||| ||||||| ||||||||| ||||| ||| ||||||||||||    
T  26316875 atcatattaatgttcaatgttttttttgcttccactattaatttaaaattattgaacatgttttatgaaatatgtttttatgtagacctaaatt 26316782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 30772357 - 30772463
Alignment:
Q  1 cgatcataattatgttcaatatttt-gtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttct 99  Q
    |||||||||| ||||||| | |||| |||||||||| || || ||||| ||||||| ||||||| ||||||||| | ||| |||| ||| |||||||||     
T  30772357 cgatcataatcatgttcattgtttttgtttgcttccactgtttattcataattattgaacatgttttatgaaatttatttttattaagaactaaatttcc 30772456  T
Q  100 aacaagt 106  Q
    |||||||    
T  30772457 aacaagt 30772463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 19059838 - 19059746
Alignment:
Q  12 atgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaacaa 104  Q
    ||||| |||||||||||||||||| ||| ||||| | |||  || || | || ||||||||| ||||| |||| ||||||||||||| |||||    
T  19059838 atgtttaatattttgtttgcttcccctaatgatttataatcgttgaatacgttttatgaaatatgtttttattaagacctaaatttccaacaa 19059746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 49151686 - 49151825
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  49151686 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 49151785  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  49151786 acaagtggtatcagagcggtcttcatgtttgatttattgg 49151825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10244419 - 10244282
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||| ||| ||||||||| |    
T  10244419 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttcca 10244320  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttatt 138  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  10244319 acaagtggtatcagagcggtcttcatgtttgatttatt 10244282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 42197247 - 42197110
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| ||||||| ||||| |    
T  42197247 cgatcataatcaggttcaatgttttgtttgcttccgctattgattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttcca 42197148  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttatt 138  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  42197147 acaagtggtatcagagcggtcttcatgtttgatttatt 42197110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 11846148 - 11846016
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || |||||||||||| ||||||||||  ||| ||||||||||||| |    
T  11846148 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattataaaatctgttttaattaagacctaaatttcca 11846049  T
Q  101 acaagtagtatcagagccgtcttcatgtttgat 133  Q
    |||||| |||||||||| |||||||||||||||    
T  11846048 acaagtggtatcagagcggtcttcatgtttgat 11846016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 38455635 - 38455500
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || ||||||||||||||||||  |||||||| ||||| ||||||| |    
T  38455635 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattatgaaatc--tttatattaagaccgaaatttcca 38455538  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttatt 138  Q
    |||| | |||||||||| ||||||||||||||||||||    
T  38455537 acaaatggtatcagagcggtcttcatgtttgatttatt 38455500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 10766953 - 10766818
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaaca 103  Q
    ||||||| ||||||||| ||||||||||||||||| |||||| | |||| || ||||||||||||||||| ||||| || | ||||||||||||| ||||    
T  10766953 tcataatcatgttcaatgttttgtttgcttccgctgttgatttataattgttgaacatgtattatgaaatttgtttttaataagacctaaatttccaaca 10766854  T
Q  104 agtagtatcagagccgtcttcatgtttgatttattg 139  Q
    ||| |||||||||||  |||||||||||||||||||    
T  10766853 agtggtatcagagccaccttcatgtttgatttattg 10766818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 49157753 - 49157855
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  49157753 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 49157852  T
Q  101 aca 103  Q
    |||    
T  49157853 aca 49157855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 11839810 - 11839708
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||||| |||||||||||||||||| ||||||||||||| |    
T  11839810 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtatcatgaaatctgtttatattaagacctaaatttcca 11839711  T
Q  101 aca 103  Q
    |||    
T  11839710 aca 11839708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 42191305 - 42191202
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| ||||||| ||||| |    
T  42191305 cgatcataatcaggttcaatgttttgtttgcttccgctattgattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttcca 42191206  T
Q  101 acaa 104  Q
    ||||    
T  42191205 acaa 42191202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 10238296 - 10238195
Alignment:
Q  2 gatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaa 101  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||| ||| ||||||||| ||    
T  10238296 gatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttccaa 10238197  T
Q  102 ca 103  Q
    ||    
T  10238196 ca 10238195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 30051182 - 30051091
Alignment:
Q  6 ataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaattt 97  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||||||||||| |||| ||||||||||||    
T  30051182 ataatcatgttcaatattttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttttattaagacctaaattt 30051091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 10760735 - 10760633
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||| | |||| || ||||||||||||||||||||||| || | ||||||||||||| |    
T  10760735 cgatcataatcatgttcaatgttttatttgcttccgctattgatttataattgttgaacatgtattatgaaatctgtttttaataagacctaaatttcca 10760636  T
Q  101 aca 103  Q
    |||    
T  10760635 aca 10760633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 48128132 - 48128030
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||| |||| || ||||||| | ||||||||||||| |||| ||||||||||||| |    
T  48128132 cgatcataatcatgttcaatgttttgtttgtttccgctattgattcataattgttgaacatgtttcatgaaatctgtttttattgagacctaaatttcca 48128033  T
Q  101 aca 103  Q
    |||    
T  48128032 aca 48128030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 55003497 - 55003400
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttc 98  Q
    |||||||||| ||||||||| |||| |||||||| |||||||||||| |||| || ||||||| ||||||||||||||| |||| |||||||||||||    
T  55003497 cgatcataatcatgttcaatgttttatttgcttctgctattgattcataattgttgaacatgttttatgaaatctgtttttattaagacctaaatttc 55003400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 38449148 - 38449048
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || ||||||||||||||||||  |||||||| ||||| ||||||| |    
T  38449148 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattatgaaatc--tttatattaagaccgaaatttcca 38449051  T
Q  101 aca 103  Q
    |||    
T  38449050 aca 38449048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 8331861 - 8331963
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || ||||||| |||| |||||| |||||||| ||| ||||||||| |    
T  8331861 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgttttataaaatctatttatattaagagctaaatttcca 8331960  T
Q  101 aca 103  Q
    |||    
T  8331961 aca 8331963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 53069139 - 53069043
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaattt 97  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||| | |||| || ||||||| |||| |||||||||| |||| ||||||||||||    
T  53069139 cgatcataatcatgttcaatgttttgtttgcttccgctatcgatttataattgttgaacatgttttataaaatctgtttttattaagacctaaattt 53069043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17055878 - 17055775
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctg-tttatatttagacctaaatttct 99  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||| | |||||||| ||| ||| |||| |||||||||||||     
T  17055878 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatattttatgaaaactgttttttattaagacctaaatttcg 17055779  T
Q  100 aaca 103  Q
    ||||    
T  17055778 aaca 17055775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 28964942 - 28965043
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||   ||| || ||||||| ||||||||||||||| | ||| |||||||||||||     
T  28964942 cgatcataatcatgttcaatgttttgtttgcttccgctattgattc---attgttgaacatgttttatgaaatctgtttttaattaagacctaaatttcc 28965038  T
Q  100 aacaa 104  Q
    |||||    
T  28965039 aacaa 28965043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 17593367 - 17593250
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||| || ||| || ||||| ||||||||||| | ||| | ||| |||||||||||||     
T  17593367 cgatcataatcatgttcaatgttttgtttgcttccgcgattgatttacgattgttgaacatctattatgaaatatatttttaattaagacctaaatttcc 17593268  T
Q  100 aacaagtagtatcagagc 117  Q
     ||||||  |||||||||    
T  17593267 tacaagtgttatcagagc 17593250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 13445146 - 13445227
Alignment:
Q  22 ttttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaaca 103  Q
    |||| ||||||||||||||||||| | |||| || |||||||  ||| |||||| ||| |||||||||||||||||||||||    
T  13445146 ttttatttgcttccgctattgatttataattgttgaacatgttctatcaaatctatttttatttagacctaaatttctaaca 13445227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 46656758 - 46656850
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaa 93  Q
    ||||||||||||| || ||| |||| ||| |||| |||||| ||||| | ||||| ||||||| ||||||||| ||||| |||||||||||||    
T  46656758 cgatcataattatattgaatgttttatttacttcagctattaattcatatttattgaacatgttttatgaaatatgtttttatttagacctaa 46656850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 24643635 - 24643532
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtat--tatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||| ||||||||| |||| ||| ||||||||||||||||| || | || ||||||| |  |||||| | ||||| |||| ||||||||||||| |    
T  24643635 atcataatcatgttcaatgttttatttacttccgctattgattcataaatgttgaacatgttttatatgaagtttgttt-tattaagacctaaatttcca 24643537  T
Q  101 acaag 105  Q
    |||||    
T  24643536 acaag 24643532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34300571 - 34300609
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgcta 39  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  34300571 cgatcataatcatgttcaatgttttgtttgcttccgcta 34300609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 3817396 - 3817256
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  3817396 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 3817297  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattgga 141  Q
    |||||| |||||||||| || || ||||||||| |||||||    
T  3817296 acaagtggtatcagagcggtgtttatgtttgatctattgga 3817256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 339445 - 339583
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| ||||||||||| |||||||| ||| ||||||||| |    
T  339445 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctctttatattaagagctaaatttcca 339544  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattg 139  Q
    |||||| |||||||||||  |||||||||||||||||||    
T  339545 acaagtggtatcagagccaccttcatgtttgatttattg 339583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3811254 - 3811152
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||| ||||| |    
T  3811254 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctacatttcca 3811155  T
Q  101 aca 103  Q
    |||    
T  3811154 aca 3811152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 42767380 - 42767276
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| | ||| |||||||||||||     
T  42767380 cgatcataatcatgttcaatattttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttcc 42767281  T
Q  100 aacaa 104  Q
    |||||    
T  42767280 aacaa 42767276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 351860 - 351963
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||| |||| || ||||||| |||||||||||||||||||| ||| ||||||||| |    
T  351860 cgatcataatcatgttcaatgttttgtttgcttccgctgttgattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttcca 351959  T
Q  101 acaa 104  Q
    ||||    
T  351960 acaa 351963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28421044 - 28420942
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || ||||||| |||||||||||||||||||  ||| ||||||||| |    
T  28421044 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttcca 28420945  T
Q  101 aca 103  Q
    |||    
T  28420944 aca 28420942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 20239025 - 20239128
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||  |  ||| || ||||||| ||||||||| |||||||||| ||||||||||||| |    
T  20239025 cgatcataatcatgttcaatgttttgtttgcttccgctattgatgtatgattgttgaacatgttttatgaaatttgtttatattaagacctaaatttcca 20239124  T
Q  101 acaa 104  Q
    ||||    
T  20239125 acaa 20239128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 12804085 - 12804177
Alignment:
Q  12 atgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaacaa 104  Q
    ||||||||| ||||| |||||||||||||||||||| |||  || ||||||| ||||||||||||||| |||| ||||||||||||| |||||    
T  12804085 atgttcaatgttttgcttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgtttttattaagacctaaatttccaacaa 12804177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 5979257 - 5979162
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaattt 97  Q
    |||||||| |||||||||| ||||||||||| ||||||||||| || ||| || ||||||||||||||||||||||| | ||| ||||||||||||    
T  5979257 atcataatcatgttcaatagtttgtttgctttcgctattgatttacgattgttcaacatgtattatgaaatctgtttttaattaagacctaaattt 5979162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 35148089 - 35147996
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaa 94  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||| | |||| || ||||||| ||||||||||||||| |||| |||| ||||    
T  35148089 cgatcataatcatgttcaatgttttgtttgcttccgctatcgatttataattgttgaacatgttttatgaaatctgtttttattaagacataaa 35147996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 43540059 - 43540142
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatt 84  Q
    |||||||||| |||||||||||||| |||  |||||||||||||||| ||||||| |||||||  |||||||||||||| ||||    
T  43540059 cgatcataatcatgttcaatattttatttaattccgctattgattcataattattgaacatgttctatgaaatctgtttttatt 43540142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 26381144 - 26381280
Alignment:
Q  2 gatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaa 101  Q
    |||||| || |||||||||||| |||||| || | |  |||||||| |||| || ||||||| ||||||||||| ||| |||||||||||||||||||||    
T  26381144 gatcatgatcatgttcaatattgtgtttgttttcccccttgattcataattgttgaacatgtcttatgaaatctattt-tatttagacctaaatttctaa 26381242  T
Q  102 caagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
      |||  |||||||| ||| ||||| |||||||||||||    
T  26381243 tgagtgatatcagag-cgtgttcatatttgatttattgg 26381280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 5849602 - 5849696
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacat-gtattatgaaatctgtttatatttagacctaaattt 97  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||| |||||  | |||| |||| ||||| |||| ||||||||||||    
T  5849602 tcatatttatgttcaatgttttggttgcttccgctattgattcataatcattgaacataattttataaaatttgtttttattaagacctaaattt 5849696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26383700 - 26383774
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatct 75  Q
    ||||||| || ||||||||||||||||||| ||| | | |||||||| |||| || ||||||| |||||||||||    
T  26383700 cgatcatgatcatgttcaatattttgtttgtttctgttgttgattcataattgttgaacatgtcttatgaaatct 26383774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 30219266 - 30219220
Alignment:
Q  94 atttctaacaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    |||||||||| || |||||||||| || |||||||||||||||||||    
T  30219266 atttctaacacgtggtatcagagcggtattcatgtttgatttattgg 30219220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 18656771 - 18656696
Alignment:
Q  65 ttatgaaatctgtttatatttagacctaaatttctaacaagtagtatcagagcc-gtcttcatgtttgatttattgg 140  Q
    ||||||||| ||||| |||||| || ||| ||||||||||||  ||| |||||  ||||||||||||||||||||||    
T  18656771 ttatgaaatttgtttttatttacacataa-tttctaacaagtgatataagagcatgtcttcatgtttgatttattgg 18656696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 172975 - 172836
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| || |||||| |||||||||||||||||||||||||| |||| |  ||||||| |||||||| ||||||||||| ||||||||||||  |    
T  172975 cgatcataatcattttcaatgttttgtttgcttccgctattgattcataattgtagaacatgttttatgaaacctgtttatattaagacctaaattttca 172876  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  172875 acaagtagtatcagagcggtcttcatgtttgatttattgg 172836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 8662866 - 8662727
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||| ||| ||||||||  |    
T  8662866 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttaca 8662767  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    |||||| |||||||||| ||||| ||||||||||||||||    
T  8662766 acaagtggtatcagagcggtctttatgtttgatttattgg 8662727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21782838 - 21782731
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  21782838 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcta 21782739  T
Q  101 acaagtag 108  Q
    ||||||||    
T  21782738 acaagtag 21782731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 21197103 - 21196969
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaaca 103  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| |||  || ||||||| ||||||||||||||| || |  |||||||||||| ||||    
T  21197103 tcatacttatgttcaatgttttgtttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgtttttactatgacctaaatttccaaca 21197004  T
Q  104 agtagtatcagagccgtcttcatgtttgatttatt 138  Q
    ||| |||||||||| ||||| ||||||||||||||    
T  21197003 agtggtatcagagcggtctttatgtttgatttatt 21196969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4580406 - 4580304
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| | || || |||||||||||||||||||||||||||| ||||||||||||| |    
T  4580406 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcatagttgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 4580307  T
Q  101 aca 103  Q
    |||    
T  4580306 aca 4580304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 32035371 - 32035269
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||| ||||||||||||| |    
T  32035371 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttcca 32035272  T
Q  101 aca 103  Q
    |||    
T  32035271 aca 32035269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8650888 - 8650792
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaattt 97  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||| ||| ||||||||    
T  8650888 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaattt 8650792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 21190951 - 21190849
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||| | |||||||||||||||||| | ||||||||||||| |    
T  21190951 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatattttatgaaatctgtttataataagacctaaatttcca 21190852  T
Q  101 aca 103  Q
    |||    
T  21190851 aca 21190849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 25343698 - 25343842
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaa----catgtattatgaaatctgtttat-atttagacctaaat 95  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||| || ||| || ||    ||||||||||||||| ||||| | ||| |||  |||||    
T  25343698 cgatcataatcatgttcaatgttttgtttgcttctgctattgatttacgattgttgaacatgcatgtattatgaaatttgtttttaattaagatataaat 25343797  T
Q  96 ttctaacaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    ||| ||||||| |||||||||| ||||||||||||||||||||||    
T  25343798 ttccaacaagtggtatcagagcggtcttcatgtttgatttattgg 25343842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 18778657 - 18778761
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatg-tattatgaaatctgtttatatttagacctaaatttct 99  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| ||||||| |||||| | ||||||||| |||||  ||| |||||||||||||     
T  18778657 cgatcataattatgttcaacgttttgtttgcttccgctattgattcataattattgaacatgtttttatgaaatttgttttaattaagacctaaatttcc 18778756  T
Q  100 aacaa 104  Q
    |||||    
T  18778757 aacaa 18778761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 25354285 - 25354388
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| |||||||||  ||||||||||||||||||||||| || ||| || ||||||||||||||||||||||| | ||| ||| |||||||||     
T  25354285 cgatcataatcatgttcaatgctttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaagatctaaatttcc 25354384  T
Q  100 aaca 103  Q
    ||||    
T  25354385 aaca 25354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 17581705 - 17581797
Alignment:
Q  6 ataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttc 98  Q
    ||||| ||||||||| ||||||||||||||||||| |||||| |||  || ||||||| ||||||| | ||||| |||||||| |||||||||    
T  17581705 ataatcatgttcaatgttttgtttgcttccgctatcgattcataatagttgaacatgttttatgaattatgtttttatttagatctaaatttc 17581797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 31756300 - 31756196
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctg--tttatatttagacctaaatttc 98  Q
    |||| ||||| ||||||||| |||| |||||||||| | |||||||| |||| || ||||||| ||||||||||||  ||| |||| |||||||||||||    
T  31756300 cgattataatcatgttcaatgttttatttgcttccgttgttgattcataattgttgaacatgttttatgaaatctgtttttttattaagacctaaatttc 31756201  T
Q  99 taaca 103  Q
     ||||    
T  31756200 caaca 31756196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 21770640 - 21770546
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaattt 97  Q
    ||||| ||||||||||| |||||||| ||||| ||||| ||| || ||| || | ||||||||||||||||||||| | ||| ||||||||||||    
T  21770640 tcatatttatgttcaatgttttgtttacttcctctattaatttacgattgttgatcatgtattatgaaatctgtttttaattaagacctaaattt 21770546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 34603415 - 34603338
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgttt 79  Q
    ||||||||||||||||||||  ||||||||||| ||||||| ||||| |||| ||| |||||| |||| |||| |||||    
T  34603415 cgatcataattatgttcaatgctttgtttgctt-cgctatttattcataattgttacacatgttttattaaatatgttt 34603338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 34724692 - 34724615
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgttt 79  Q
    ||||||||||||||||||||  ||||||||||| ||||||| ||||| |||| ||| |||||| |||| |||| |||||    
T  34724692 cgatcataattatgttcaatgctttgtttgctt-cgctatttattcataattgttacacatgttttattaaatatgttt 34724615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 21783391 - 21783350
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgatt 45  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  21783391 tcatatttatgttcaatgttttgtttgcttccgctattgatt 21783350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 21789614 - 21789573
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgatt 45  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  21789614 tcatatttatgttcaatgttttgtttgcttccgctattgatt 21789573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 6098062 - 6098191
Alignment:
Q  12 atgttcaatattttgtttgcttccgctatt-gattcacaattatta---aacatgtattatgaaatctgtttat-atttagacctaaatttctaacaagt 106  Q
    ||||||||| |||||| | ||||||||||| |||||| |||| ||    ||||||| ||||||||| ||||| | ||| |||||||| |||  |||||||    
T  6098062 atgttcaatgttttgtctacttccgctatttgattcataattgttgttgaacatgttttatgaaatttgttttttattaagacctaagttttcaacaagt 6098161  T
Q  107 agtatcagagccgtcttcatgtttgattta 136  Q
     |||| |||||  |||||||||||||||||    
T  6098162 ggtatgagagcaatcttcatgtttgattta 6098191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 25387589 - 25387452
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| | || || ||||||| |||||||||||||||||||| ||| ||| ||||| |    
T  25387589 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcatatttgttgaacatgttttatgaaatctgtttatattaagatctatatttcca 25387490  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttatt 138  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  25387489 acaagtggtatcagagcggtcttcatgtttgatttatt 25387452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 31051620 - 31051761
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatg-----aaatctgtttatatttagacctaaattt 97  Q
    |||||||| ||||||||| |||||||||||||||||||||||| || ||| || |||||||||||||     ||||||||||||||| |||||||||||     
T  31051620 atcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgatatgaaatctgtttatattaagacctaaattc 31051719  T
Q  98 ctaacaagtagtatcagagccgtcttcatgtttgatttattg 139  Q
    ||||||||| |||||||||| ||||||||||||||| |||||    
T  31051720 ctaacaagtggtatcagagcggtcttcatgtttgatctattg 31051761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31058118 - 31058221
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  31058118 cgatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcta 31058217  T
Q  101 acaa 104  Q
    ||||    
T  31058218 acaa 31058221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 1078298 - 1078401
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| | |||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  1078298 cgatcataatcatgttcaatgttttgtttgcttccgctattgattaataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttcca 1078397  T
Q  101 acaa 104  Q
    ||||    
T  1078398 acaa 1078401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 25381620 - 25381518
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| | || || |||||||||||||||||||||||||||| ||||||| ||||| |    
T  25381620 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcatagttgttgaacatgtattatgaaatctgtttatattaagacctatatttcca 25381521  T
Q  101 aca 103  Q
    |||    
T  25381520 aca 25381518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 27955235 - 27955336
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| |  |||||||||||||| ||||||||||||||| |||| |||||||||||||||    
T  27955235 cgatcataatcatgttcaatgttttgtttgcttccgctattgatt-atgattattaaacatgttttatgaaatctgtttttattaagacctaaatttcta 27955333  T
Q  101 aca 103  Q
    |||    
T  27955334 aca 27955336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50306263 - 50306365
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||| ||||||||||||| |    
T  50306263 cgattataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttcca 50306362  T
Q  101 aca 103  Q
    |||    
T  50306363 aca 50306365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 34740060 - 34740157
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttc 98  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| ||||  | ||||||| |||||||||||||||||||| |||||||||||||    
T  34740060 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgatgaacatgttttatgaaatctgtttatattaagacctaaatttc 34740157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 38152049 - 38151923
Alignment:
Q  12 atgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaacaagtagtat 111  Q
    ||||||||||||||||||||||||||| |||||| | |||| || ||||||| ||||||||||| ||| |||| |||| |  ||||||||||||| ||||    
T  38152049 atgttcaatattttgtttgcttccgctgttgattaataattgttgaacatgttttatgaaatctattt-tattaagacttggatttctaacaagtggtat 38151951  T
Q  112 cagagc-cgtcttcatgtttgatttatt 138  Q
    ||||||  ||||||||||||||||||||    
T  38151950 cagagcgagtcttcatgtttgatttatt 38151923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 44410087 - 44410186
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaaca 103  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| |||  || ||||||| ||||||||||||||| || | ||||||||||||| ||||    
T  44410087 tcatatttatgttcaatgttttgtttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgtttttagtaagacctaaatttccaaca 44410186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 24963776 - 24963657
Alignment:
Q  12 atgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaacaagtagtat 111  Q
    ||||||||| |||||||||||||||||||||||||| | |  || ||||||| ||||||||||||||| |||| ||| ||||||||  ||||| | ||||    
T  24963776 atgttcaatgttttgtttgcttccgctattgattcatattcgttgaacatgttttatgaaatctgtttttattaagatctaaattttcaacaaatggtat 24963677  T
Q  112 cagagc-cgtcttcatgttt 130  Q
     |||||  ||||||||||||    
T  24963676 tagagcatgtcttcatgttt 24963657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 12183667 - 12183562
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaatta-----ttaaacatgtattatgaaatctgtttatatttagacctaaattt 97  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||     || ||||| | ||||||||||| ||| |||| ||| ||||||||    
T  12183667 atcataattatgttcaatattttgtttgcttccactattgattcataattatattgttgaacatattttatgaaatctatttttattaagaactaaattt 12183568  T
Q  98 ctaaca 103  Q
    | ||||    
T  12183567 ccaaca 12183562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 24926828 - 24926744
Alignment:
Q  12 atgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaattt 97  Q
    ||||||||| ||||| |||||||||||||||||||| |||  || ||||||| ||||| ||||||||| |||| ||||||||||||    
T  24926828 atgttcaatgttttggttgcttccgctattgattcataatcgttgaacatgttttatg-aatctgtttttattaagacctaaattt 24926744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8092931 - 8092862
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatga 70  Q
    |||||||||| ||||||||| |||| |||||||| |||||||||| || ||| || || |||||||||||    
T  8092931 cgatcataatcatgttcaatgttttatttgcttctgctattgatttacgattgttgaatatgtattatga 8092862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 26963423 - 26963292
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaaca 103  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| |||  || ||||||| ||||||||| ||||| |||| ||||||||||||| ||||    
T  26963423 tcatacttatgttcaatgttttgtttgcttccgctattgattcataatcgttgaacatgttttatgaaatttgtttttattaagacctaaatttccaaca 26963324  T
Q  104 agtagtatcagagccgtcttcatgtttgattt 135  Q
    |||||||||||||| |||||||||||||||||    
T  26963323 agtagtatcagagcggtcttcatgtttgattt 26963292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 24288061 - 24288196
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| ||||||||||| ||  |||| ||||||||||||| |    
T  24288061 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctatt--tattaagacctaaatttcca 24288158  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttatt 138  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  24288159 acaagtggtatcagagcggtcttcatgtttgatttatt 24288196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 48161033 - 48161168
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | ||    ||||| | ||||||||||| ||| |||| |||||||||||||||    
T  48161033 cgatcataattatgttcaatgttttgtttgcttccgctattgattcatagttg---aacatattttatgaaatctatttttattaagacctaaatttcta 48161129  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattg 139  Q
    |||||| |||||||||||  |||||||||||||||||||    
T  48161130 acaagtggtatcagagccaccttcatgtttgatttattg 48161168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 49976661 - 49976800
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| || |||||| |||||||||||| |||||| |||||| |||| || || |||| ||||||||| ||||| |||| | | |||||||||||    
T  49976661 cgatcataatcatattcaatgttttgtttgctttcgctatcgattcataattgttgaatatgttttatgaaatttgtttttattaaaatctaaatttcta 49976760  T
Q  101 acaagtagtatcagagccgtcttcatgtttgatttattgg 140  Q
    |||||| |||||||||  ||||||||||||||||||||||    
T  49976761 acaagtggtatcagagtggtcttcatgtttgatttattgg 49976800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10739424 - 10739286
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||| |||| || ||||||| ||||||||||||||||| || ||| |||||| || |    
T  10739424 cgatcataatcatgttcaatgttttgtttgcttctgctattgattcataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtcca 10739325  T
Q  101 acaagtagtatcagagc-cgtcttcatgtttgatttatt 138  Q
    |||||| ||||||||||  |||| |||||||| ||||||    
T  10739324 acaagtggtatcagagcaggtctacatgtttggtttatt 10739286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10953193 - 10953055
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||| |||| || ||||||| ||||||||||||||||| || ||| |||||| || |    
T  10953193 cgatcataatcatgttcaatgttttgtttgcttctgctattgattcataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtcca 10953094  T
Q  101 acaagtagtatcagagc-cgtcttcatgtttgatttatt 138  Q
    |||||| ||||||||||  |||| |||||||| ||||||    
T  10953093 acaagtggtatcagagcaggtctacatgtttggtttatt 10953055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 6257290 - 6257187
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||| |  ||| || ||||||||||||||||||| |||||||| ||||||||||||| |    
T  6257290 cgatcataatcatgttcaatgttttgtttgcttccgctgttgatttatgattgttgaacatgtattatgaaatctatttatattaagacctaaatttcca 6257191  T
Q  101 acaa 104  Q
    ||||    
T  6257190 acaa 6257187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 33458352 - 33458249
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || ||| || ||||| ||||||||||||||||| | ||| |||||||||||||     
T  33458352 cgatcataatcatgttcaatattttgtttgcttccgctattgatttacgattgttgaacatatattatgaaatctgtttttaattaagacctaaatttcc 33458253  T
Q  100 aaca 103  Q
    ||||    
T  33458252 aaca 33458249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 26956911 - 26956812
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaaca 103  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||| |||  || ||||||| ||||||||||||||| |||| ||||||||||||| ||||    
T  26956911 tcatacttatgttcaatgttttatttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgtttttattaagacctaaatttccaaca 26956812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 10733331 - 10733237
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaat 95  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||| |||| || ||||||| ||||||||||||||||| || ||| ||||||    
T  10733331 cgatcataatcatgttcaatgttttatttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatgttaagagctaaat 10733237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 10947100 - 10947006
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaat 95  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||| |||| || ||||||| ||||||||||||||||| || ||| ||||||    
T  10947100 cgatcataatcatgttcaatgttttatttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatgttaagagctaaat 10947006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50168667 - 50168769
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||| ||| ||||| |||||| || |||| ||||||||||||| |    
T  50168667 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacgtgttttatgtaatctggttttattaagacctaaatttcca 50168766  T
Q  101 aca 103  Q
    |||    
T  50168767 aca 50168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 34308153 - 34308057
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaa 101  Q
    ||||| || ||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||| |||||||||| |||| |||| |||||||||||    
T  34308153 tcatatttgtgttcaatattttgtatgcttccgctattgattcataattattgaacatgttttataaaatctgttt-tattaagacgtaaatttctaa 34308057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 4632872 - 4632964
Alignment:
Q  12 atgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaacaa 104  Q
    ||||||||| ||||||||||||||||| |||||| | |||| || ||||||| ||||||||||||||| |||| ||||||||||||| |||||    
T  4632872 atgttcaatgttttgtttgcttccgctgttgattaataattgttgaacatgttttatgaaatctgtttttattaagacctaaatttccaacaa 4632964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 48167252 - 48167351
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||   ||  || ||||| | ||||||||||| ||| |||| |||||||||||||||    
T  48167252 cgatcataattatgttcaatgttttgtttgcttccgctattgattc---atagttgaacatattttatgaaatctatttttattaagacctaaatttcta 48167348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 55473225 - 55473129
Alignment:
Q  3 atcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaac 102  Q
    |||||||| || ||||||||||| |||||||||||||||||||    |||||| ||||| | ||||||||| ||||| |||| |||||||||||||||||    
T  55473225 atcataatcatattcaatattttatttgcttccgctattgatt---tattattgaacatattttatgaaatttgtttctattaagacctaaatttctaac 55473129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19686413 - 19686341
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaat 73  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||| | | ||||| ||||||| |||||||||    
T  19686413 cgatgataattacgttcaatattttgtttgcttccgttattgatttatagttattgaacatgttttatgaaat 19686341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 50156043 - 50156161
Alignment:
Q  25 tgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaacaagtagtatcagagc-cgtctt 123  Q
    ||||| ||||||||||||||||| |||| || ||||||| ||||  |||||| || |||| | |  ||||||| ||||||||  |||||||||  |||||    
T  50156043 tgtttacttccgctattgattcataattgttgaacatgttttatataatctggttttattaacaattaaatttttaacaagtgatatcagagcgggtctt 50156142  T
Q  124 catg-tttgatttattgga 141  Q
    |||| ||||||||||||||    
T  50156143 catgttttgatttattgga 50156161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3769641 - 3769710
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatga 70  Q
    |||||||||| ||||||||| ||||||||||||    |||||||||| ||||||| ||||| | ||||||    
T  3769641 cgatcataatcatgttcaatgttttgtttgcttaaattattgattcataattattgaacatattttatga 3769710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 33461474 - 33461434
Alignment:
Q  5 cataattatgttcaatattttgtttgcttccgctattgatt 45  Q
    |||||| ||||||||| |||||||||||||| |||||||||    
T  33461474 cataatcatgttcaatgttttgtttgcttccactattgatt 33461434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 6600 - 6734
Alignment:
Q  4 tcataattatgttcaatattttgtttgcttccgctattgattcacaa-ttattaaacatgtattatgaaatctgtttatatttagacctaaatttctaac 102  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| || || || ||||||  ||||||||| |||||||||| ||| ||||||||| |||    
T  6600 tcataatcatgttcaatgttttgtttgcttccgctattgattcataaattgttgaacatggtttatgaaat-tgtttatattaagagctaaatttccaac 6698  T
Q  103 aagtagtatcagagccgtcttcatgtttgatttatt 138  Q
    |||| |||||||||||||||||||||||||||||||    
T  6699 aagtggtatcagagccgtcttcatgtttgatttatt 6734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 12470 - 12573
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattca-caattattaaacatgtattatgaaatctgtttatatttagacctaaatttct 99  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||  |||| || || |||  ||||||||| |||||||||| ||| |||||||||     
T  12470 cgatcataattatgttcaatgttttatttgcttccgctattgattcataaattgttgaatatggtttatgaaat-tgtttatattaagagctaaatttcc 12568  T
Q  100 aacaa 104  Q
    |||||    
T  12569 aacaa 12573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5609 - 5712
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||  ||| ||||||||| |    
T  5609 cgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttcca 5708  T
Q  101 acaa 104  Q
    ||||    
T  5709 acaa 5712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 704 - 605
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttcta 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||   ||  |||||||||| ||||||||||||||| |||| ||||||||||||| |    
T  704 cgatcataatcatgttcaatgttttgtttgcttccgctattgattc---atagttaaacatgttttatgaaatctgtttttattaagacctaaatttcca 608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1279 - 1176
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttat-atttagacctaaatttct 99  Q
    |||||||||| ||||||||| ||||||||||||||||  |||||||| |||| || ||||||| ||||||||||||||| | ||| |||||||||||||     
T  1279 cgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacatgttttatgaaatctgtttttaattaagacctaaatttcc 1180  T
Q  100 aaca 103  Q
    ||||    
T  1179 aaca 1176  T

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Target: scaffold0085 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 38502 - 38599
Alignment:
Q  1 cgatcataattatgttcaatattttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttc 98  Q
    ||||||||| |||||||||| |||||||||||||| || ||||||   ||| ||| ||||||| |||||||||||| || ||||||  ||||||||||    
T  38502 cgatcataactatgttcaatgttttgtttgcttccactgttgatttctaatgattgaacatgtcttatgaaatctggttttatttaatcctaaatttc 38599  T

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Target: scaffold1114 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 1182 - 1261
Alignment:
Q  24 ttgtttgcttccgctattgattcacaattattaaacatgtattatgaaatctgtttatatttagacctaaatttctaaca 103  Q
    |||||||||| || |||||||||| |||  || ||||||| ||||||||||||||| |||| ||| || |||||| ||||    
T  1182 ttgtttgctttcgatattgattcataatggttgaacatgttttatgaaatctgtttttattaagatctgaatttccaaca 1261  T

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