View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_high_51 (Length: 239)
Name: NF16124_high_51
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_high_51 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 39203271 - 39203049
Alignment:
| Q |
17 |
acagaatgggaaacttattcaatgtctcaaacacgtaatacaacaaccaaatataaaaaaggaagctctttgctaggtttcaaaattcaatatatcaaaa |
116 |
Q |
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| T |
39203271 |
acagaatgggaaacttattcaatgtctcaaacacgtaatacaacaaccaaatataaaaaaggaagctctttgctaggtttcaaaattcaatatatcaaaa |
39203172 |
T |
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| Q |
117 |
ttctaaaattataaagtcgactacggctccaaaaacacagcgacaaatgtgtacctgagatgcttccggctgttagatggtcagataactctgaactccg |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39203171 |
ttctaaaattataaagtcgactatggctccaaaaacacagcgacaaatgtgtacctgagatgcttccggctgttagatggtcagataactctgaactccg |
39203072 |
T |
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| Q |
217 |
aaaccgcctctgaagcccatcat |
239 |
Q |
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||||||||||| ||||||||||| |
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| T |
39203071 |
aaaccgcctctcaagcccatcat |
39203049 |
T |
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