View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16124_high_52 (Length: 236)

Name: NF16124_high_52
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16124_high_52
NF16124_high_52
[»] chr4 (4 HSPs)
chr4 (28-217)||(24850988-24851177)
chr4 (95-197)||(12240659-12240761)
chr4 (95-197)||(49620676-49620778)
chr4 (94-197)||(23666590-23666693)
[»] chr3 (1 HSPs)
chr3 (95-197)||(45903409-45903511)
[»] chr7 (6 HSPs)
chr7 (94-197)||(41985338-41985441)
chr7 (113-197)||(14792361-14792445)
chr7 (94-197)||(7260257-7260360)
chr7 (107-197)||(19681032-19681122)
chr7 (95-197)||(4926107-4926209)
chr7 (94-196)||(1264952-1265055)
[»] chr6 (3 HSPs)
chr6 (95-197)||(23594525-23594627)
chr6 (107-197)||(26377902-26377992)
chr6 (95-197)||(14277217-14277319)
[»] chr1 (5 HSPs)
chr1 (95-197)||(19595974-19596076)
chr1 (95-193)||(32495730-32495828)
chr1 (95-193)||(46336408-46336506)
chr1 (94-197)||(43997156-43997259)
chr1 (133-197)||(43632940-43633004)
[»] chr5 (3 HSPs)
chr5 (95-197)||(39305464-39305566)
chr5 (107-197)||(9625449-9625539)
chr5 (113-197)||(17540056-17540140)
[»] chr2 (2 HSPs)
chr2 (95-193)||(38992805-38992903)
chr2 (94-141)||(26692009-26692056)
[»] scaffold1603 (1 HSPs)
scaffold1603 (97-197)||(974-1074)
[»] chr8 (1 HSPs)
chr8 (94-197)||(13083595-13083698)
[»] scaffold0027 (1 HSPs)
scaffold0027 (145-197)||(21950-22002)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 24851177 - 24850988
Alignment:
Q  28 atttcatattatatattgagtgtgtagaggagtctgaagattcgatagattatgtttaaccagatatggatttgctgcggtagcaaattcacacaatttt 127  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  24851177 attttatattatatattgagtgtgtagaggagtctgaagattcgatagattatgtttaaccagatatggatttgctgctgtagcaaattcacacagtttt 24851078  T
Q  128 ccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaacaatgtcagatcttgaccattcat 217  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24851077 ccgcagtagtaaatctcatccatcaatccatgatctgacggttccaattcacaacacagatttcaacaatgtcagatcttgaccattcat 24850988  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 12240761 - 12240659
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaac 194  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||| ||| ||||||||| |||||||||||||||||||||||| || | ||||||||    
T  12240761 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcataaatttcaac 12240662  T
Q  195 aat 197  Q
    |||    
T  12240661 aat 12240659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 49620778 - 49620676
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaac 194  Q
    ||||||| ||| |||||||||||||| | ||| ||||||||| |||| ||| ||||||||| |||||||||||||||||||| ||| |||| ||||||||    
T  49620778 ggatttgttgctgtagcaaattcacatagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaatttcaac 49620679  T
Q  195 aat 197  Q
    |||    
T  49620678 aat 49620676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 23666590 - 23666693
Alignment:
Q  94 tggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaa 193  Q
    |||||||||||| |||||||||||||||| ||| ||| || || |||| |||  |||||||| || ||| |||||||||||||| |||||| ||||||||    
T  23666590 tggatttgctgctgtagcaaattcacacagtttgccgtaggagaaaatctcagtcatcaatccataatccgacggttccaattcgcaacacggatttcaa 23666689  T
Q  194 caat 197  Q
    ||||    
T  23666690 caat 23666693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 45903511 - 45903409
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaac 194  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  45903511 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaac 45903412  T
Q  195 aat 197  Q
    |||    
T  45903411 aat 45903409  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 41985441 - 41985338
Alignment:
Q  94 tggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaa 193  Q
    |||||||||||| ||||||||||||||||||||  |||||||| |||| ||| ||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  41985441 tggatttgctgccgtagcaaattcacacaatttgtcgcagtagcaaatctcagccatcaatccatgatccgacggttccaattcacaacacggatttcaa 41985342  T
Q  194 caat 197  Q
    ||||    
T  41985341 caat 41985338  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 14792361 - 14792445
Alignment:
Q  113 aattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaacaat 197  Q
    |||||||||| ||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14792361 aattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacaacacaaatttcaacaat 14792445  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 7260257 - 7260360
Alignment:
Q  94 tggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaa 193  Q
    ||||||||||||  ||||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||| ||| ||||| ||| || |||||| ||    
T  7260257 tggatttgctgctatagcaaattcacacagtttgccgcagtagtaaatctcagccatcaatctatgatctgactgtttcaatttacagcaaagattttaa 7260356  T
Q  194 caat 197  Q
    ||||    
T  7260357 caat 7260360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 19681122 - 19681032
Alignment:
Q  107 gtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaacaat 197  Q
    |||||||||||||||| ||| ||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||| | |||| ||||||    
T  19681122 gtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacaacataaattttaacaat 19681032  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 4926107 - 4926209
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaac 194  Q
    ||||||||||| |||||||||||||||| ||| | || |||| |||| ||| ||||||||| ||||||| ||||||| |||||  | |||| ||||||||    
T  4926107 ggatttgctgctgtagcaaattcacacagtttgctgctgtagcaaatctcagccatcaatccatgatctaacggttctaattcgtagcacaaatttcaac 4926206  T
Q  195 aat 197  Q
    |||    
T  4926207 aat 4926209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 1265055 - 1264952
Alignment:
Q  94 tggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacgg-ttccaattcacaacacagatttca 192  Q
    |||||||||||| |||||||||||| ||| ||| |   | |||||||| ||| ||||||||  ||||||||| || ||| |||||||| ||||||||| |    
T  1265055 tggatttgctgctgtagcaaattcaaacagtttgctataatagtaaatctcagccatcaattcatgatctgatggtttcaaattcacagcacagatttta 1264956  T
Q  193 acaa 196  Q
    ||||    
T  1264955 acaa 1264952  T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 23594525 - 23594627
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaac 194  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||| ||| ||||||||| |||||||||||||||||||||||| |||| ||||||||    
T  23594525 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacaaatttcaac 23594624  T
Q  195 aat 197  Q
    |||    
T  23594625 aat 23594627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 26377992 - 26377902
Alignment:
Q  107 gtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaacaat 197  Q
    |||||||||||||||| ||| ||||||||| |||| |||  |||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  26377992 gtagcaaattcacacagtttgccgcagtagcaaatctcagtcatcaatccatgatctgacggttccaattcacagcacaaatttcaacaat 26377902  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 14277217 - 14277319
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaac 194  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||| ||| || |||||  ||||||||||| |||||||||||| |||  ||||||||    
T  14277217 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccgtcaattcatgatctgacgattccaattcacagcacgaatttcaac 14277316  T
Q  195 aat 197  Q
    |||    
T  14277317 aat 14277319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 19595974 - 19596076
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaac 194  Q
    ||||||||||  |||||||||||||||| ||| ||||||||| |||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  19595974 ggatttgctgttgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaac 19596073  T
Q  195 aat 197  Q
    |||    
T  19596074 aat 19596076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 32495730 - 32495828
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaa 193  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  32495730 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacaacacaaatttcaa 32495828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 46336506 - 46336408
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaa 193  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||| ||| ||||||||| ||||| |||||||||||||||||| |||| |||||||    
T  46336506 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatttgacggttccaattcacagcacaaatttcaa 46336408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 43997156 - 43997259
Alignment:
Q  94 tggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaa 193  Q
    |||||||||||| |||||||||||||||| |||  |||||| | |||| ||| ||||||||  |||||||||||||| ||||||||| |||| |||||||    
T  43997156 tggatttgctgctgtagcaaattcacacagtttatcgcagttgcaaatctcagccatcaattcatgatctgacggtttcaattcacagcacatatttcaa 43997255  T
Q  194 caat 197  Q
    ||||    
T  43997256 caat 43997259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 43633004 - 43632940
Alignment:
Q  133 gtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaacaat 197  Q
    |||| |||| ||| ||||||||| |||||||||||||||||||||||| |||  | |||||||||    
T  43633004 gtagcaaatctcaaccatcaatccatgatctgacggttccaattcacagcacgaaattcaacaat 43632940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 39305464 - 39305566
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaac 194  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||| ||| ||||||||| |||||||||||||||||||| ||| |||| ||||||||    
T  39305464 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaatttcaac 39305563  T
Q  195 aat 197  Q
    |||    
T  39305564 aat 39305566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 9625449 - 9625539
Alignment:
Q  107 gtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaacaat 197  Q
    |||||||||||||||| |||  |||||||| |||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  9625449 gtagcaaattcacacagtttgtcgcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaat 9625539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 17540140 - 17540056
Alignment:
Q  113 aattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaacaat 197  Q
    |||||||||| ||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  17540140 aattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacagcacaaatttcaacaat 17540056  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 38992903 - 38992805
Alignment:
Q  95 ggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaa 193  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||||||||| |||| ||||||| | ||||||||||||    
T  38992903 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgaaggttgcaattcaaagcacagatttcaa 38992805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 26692056 - 26692009
Alignment:
Q  94 tggatttgctgcggtagcaaattcacacaattttccgcagtagtaaat 141  Q
    |||||||||||| |||||||||||||||| ||| ||||||||| ||||    
T  26692056 tggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaat 26692009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 1074 - 974
Alignment:
Q  97 atttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaacaa 196  Q
    ||||||||| |||||||||||||||| |||  |||||||| |||| ||| ||||||||  |||||||||||||||||||||||| ||| |||||||||||    
T  1074 atttgctgctgtagcaaattcacacagtttgtcgcagtagcaaatctcaaccatcaattcatgatctgacggttccaattcacagcacggatttcaacaa 975  T
Q  197 t 197  Q
    |    
T  974 t 974  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 13083595 - 13083698
Alignment:
Q  94 tggatttgctgcggtagcaaattcacacaattttccgcagtagtaaatatcatccatcaatctatgatctgacggttccaattcacaacacagatttcaa 193  Q
    ||||||| |||  |||||||||| ||||| ||| ||||||||| |||| ||| | ||||||| ||||||||| |||||||||||||| ||| ||||||||    
T  13083595 tggatttactgttgtagcaaatttacacagtttgccgcagtagcaaatctcagcgatcaatccatgatctgatggttccaattcacagcacggatttcaa 13083694  T
Q  194 caat 197  Q
    ||||    
T  13083695 caat 13083698  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 22002 - 21950
Alignment:
Q  145 atccatcaatctatgatctgacggttccaattcacaacacagatttcaacaat 197  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  22002 atccatcaatccatgatctgacggttccaattcacaatacagattttaacaat 21950  T

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