View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_high_8 (Length: 549)
Name: NF16124_high_8
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 20 - 498
Target Start/End: Original strand, 49673913 - 49674392
Alignment:
| Q |
20 |
gatgacccctttgagtttctatctcctcagatctccattgtagtacaattatctgatgattgtaaccagtgtcttcatcatcaagggggacgatgccgac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673913 |
gatgacccctttgagtttctatctcctcagatctccattgtagtacaattatctgatgattgtaaccagtgtcttcatcatcaagggggacgatgccgac |
49674012 |
T |
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| Q |
120 |
ttaatattcaaggaaaattccactgtgccgaaggtatgctttcacaatacatgcacattgttaaaaagagtttaagagaggggaggttgtcctgagtgaa |
219 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49674013 |
ttgatattcaaggaaaattccactgtgccgaaggtatgctttcacaatacatgcgcattgttaaaaagagtttaagagaggggaggttgtcctgattgaa |
49674112 |
T |
|
| Q |
220 |
gggcattaaatagacctcaaccaaaggttacacaacaaaggtcgtt-aaaaaaggttaccagaaaatccaacttcttagactttttcgttggacgtatac |
318 |
Q |
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| T |
49674113 |
gggcattaaatagacctcaaccaaaggttacacaacaaaggttgttaaaaaaaggttaccagaaaatccaacttctaagactttttcgttggacgtatac |
49674212 |
T |
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| Q |
319 |
taaaattttggcacccaacagtgttcaatcctaagtatcagttactagactgtattatatacagtagaatagaaatttgaaatttccatccttgtatagt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49674213 |
taaaattttggcacccaacagtgttcaatcctaagtatcagttactagactgtattatatacagtagaatagaaatttgaaatttccatccttgtatagt |
49674312 |
T |
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| Q |
419 |
aatttaaggaaatggatccccttcagctgctgcaccgtgcagctgctgtcggggtcaaaatacataatttagtctcaagt |
498 |
Q |
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| T |
49674313 |
aatttaaggaaatggatccccttcagctgctgcaccgtgcagctgctgtcggggtcaaaatacataatttagtctcaagt |
49674392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 49723818 - 49723956
Alignment:
| Q |
20 |
gatgacccctttgagtttctatctcctcagatctccattgtagtacaattatctgatgattgtaaccagtgtcttcatcatcaagggggacgatgccgac |
119 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49723818 |
gatgatccctttgagtttctatctcctcagatctccattgtagtacaattatctgatgattgtaaccagtgtcttcatcatcaagggggacgatgccgac |
49723917 |
T |
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| Q |
120 |
ttaatattcaaggaaaattccactgtgccgaaggtatgc |
158 |
Q |
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| T |
49723918 |
ttgatattcaaggaaaattccactgtgccgaaggtatgc |
49723956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 455 - 539
Target Start/End: Original strand, 49674391 - 49674475
Alignment:
| Q |
455 |
gtgcagctgctgtcggggtcaaaatacataatttagtctcaagtcttcactttattgcttgttttcaatttaatcggtacctttg |
539 |
Q |
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| T |
49674391 |
gtgcagctgctgtcggggtcaaaatacataatttagtctcaagtcttcactttattgcttgttttcaatttaatcggtacctttg |
49674475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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