View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_1 (Length: 852)
Name: NF16124_low_1
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 282 - 836
Target Start/End: Complemental strand, 38950799 - 38950224
Alignment:
| Q |
282 |
ttgtttgattttgactgacaatgtttgacagagattctatcttgctgggaaccaagaacaagaatttctacgataccagcaacaacaattgaggggaagg |
381 |
Q |
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| T |
38950799 |
ttgtttgtttttgactgacaatgcttgacagagattctatcttgctgggaaccaagagcaagagtttttacaatatcagcaacaacaagtgagaggaagg |
38950700 |
T |
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| Q |
382 |
gaagaa---------------------caagaaagtgacggcaacaacattttcagtggcttcaagagggatttcttggaagatgcattgaacgtgaata |
460 |
Q |
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| T |
38950699 |
ggagaacaaaggagaggaagggaacaacaagaaaatgaaggaggcaacattttcagtggcttcaagagggatttcttggaagatgcattgaacgtgaata |
38950600 |
T |
|
| Q |
461 |
ggcatatagttgacagacttcaaggcaggaatgaagatgaggagaagggagccattgtcaaagtgaaaggtggcctcagcttcgttaccccaccagagag |
560 |
Q |
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| T |
38950599 |
ggcatatagttgacagacttcaaggcaggaatgaagatgaggagaagggagccattgtcaaagtgagaggtggcctcagctttgttaccccaccagagag |
38950500 |
T |
|
| Q |
561 |
gcaatcacgtcaccaaggaggcagcataatagaggaagatgaagatgaagaggacgagtggaggaggccacatcatcagaaaagcagaagaggggaagag |
660 |
Q |
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| T |
38950499 |
gcaatcacgtcaccaaggaggcagcataatagaggaagatgaagatgaagaggacgagtggaggaggccacatcatcagaaaagcagaagaggggaagag |
38950400 |
T |
|
| Q |
661 |
gaagagcgcccctgccgccgaggccaaaaatgtgaaagaagcaacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatctt |
760 |
Q |
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| T |
38950399 |
gaagagcgcccctgccgccgaggccaaaaatgtgaaagaagcaacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatctt |
38950300 |
T |
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| Q |
761 |
catcacctgacatctacaaccctgaagctggtagaatcaaaactgtcaccagctttgacctcccagctctaaggtg |
836 |
Q |
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| T |
38950299 |
catcacctgacatctacaaccctgaagctggtagaatcaaaactgtcaccagctttgacctcccagctctaaggtg |
38950224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 38943579 - 38943412
Alignment:
| Q |
11 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctactggtactgtattttggatgtacaatgaccaggagactcca |
110 |
Q |
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| T |
38943579 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacactcca |
38943480 |
T |
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| Q |
111 |
gttattgctatttcccttactgacaccggcagcttccaaaatcaacttgatgagatgcctagggtgag |
178 |
Q |
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| T |
38943479 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgag |
38943412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 38951057 - 38950890
Alignment:
| Q |
11 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctactggtactgtattttggatgtacaatgaccaggagactcca |
110 |
Q |
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| T |
38951057 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacactcca |
38950958 |
T |
|
| Q |
111 |
gttattgctatttcccttactgacaccggcagcttccaaaatcaacttgatgagatgcctagggtgag |
178 |
Q |
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| T |
38950957 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgag |
38950890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 282 - 652
Target Start/End: Complemental strand, 38943321 - 38942936
Alignment:
| Q |
282 |
ttgtttgattttgactgacaatgtttgacagagattctatcttgctgggaaccaagaacaagaatttctacgataccagcaacaacaattgaggggaagg |
381 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||| ||| |||||||||||| |||| |||||| |
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| T |
38943321 |
ttgtttgtttttgactgacaatgcttgacagagattctatcttgctgggaaccaagagcaagagtttttacaatatcagcaacaacaagtgagaggaagg |
38943222 |
T |
|
| Q |
382 |
gaagaa---------------------caagaaagtgacggcaacaacattttcagtggcttcaagagggatttcttggaagatgcattgaacgtgaata |
460 |
Q |
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| T |
38943221 |
ggagaacaaaggagaggaagggaacaacaagaaaatgaaggaggcaacattttcagtggcttcaagagggatttcttggaagatgcattgaacgtgaaaa |
38943122 |
T |
|
| Q |
461 |
ggcatatagttgacagacttcaaggcaggaatgaagatgaggagaagggagccattgtcaaagtgaaaggtggcctcagcttcgttaccccaccagagag |
560 |
Q |
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||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||| || |||||| || | | ||| |||||||| |
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| T |
38943121 |
ggcatatagttgaaaaacttcaaggcaggaatgaagaccaggagaagggagccattgtcaaagtggaaggaggactcagcatcatgagccctccagagag |
38943022 |
T |
|
| Q |
561 |
gcaatcacgtca-ccaaggaggcagcataatagaggaagatgaagatgaagaggacgagtggaggaggccacatcatcagaaaagcagaagag |
652 |
Q |
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||| ||| || || || || || || || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
38943021 |
acaacaacgccaccccagcagacaagat----gaagaagatgaagatgaagaggatgagt---ggaggccacatcatcagaaaagcagaagag |
38942936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 702 - 836
Target Start/End: Complemental strand, 38942922 - 38942788
Alignment:
| Q |
702 |
caacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatcttcatcacctgacatctacaaccctgaagctggtagaatcaaa |
801 |
Q |
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||||||||||| ||||||||||||||| || || |||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38942922 |
caacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctcaagctggtagaatcaaa |
38942823 |
T |
|
| Q |
802 |
actgtcaccagctttgacctcccagctctaaggtg |
836 |
Q |
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||| |||||||||| |||||||||||||| ||||| |
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| T |
38942822 |
actatcaccagcttcgacctcccagctctcaggtg |
38942788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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