View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16124_low_10 (Length: 521)
Name: NF16124_low_10
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Complemental strand, 2018858 - 2018353
Alignment:
| Q |
11 |
cacagatccaaggatcatcattcatcaatgtgacaaaaatgtttgttccaattatttcaaaatgttacagaatgcaatagcaaatgatcgaaaaacatga |
110 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2018858 |
cacagatccaaggatcatcattca---atgtgacaaaaatgtttgttccaattatttcaaaatgttacagaatgcaagagcaaatgatcgaaaaacatga |
2018762 |
T |
|
| Q |
111 |
aaagtatgtactcttaggccgtaaacctgaccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatatttggtagtgattcg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2018761 |
aaagtatgtactcttaggccgtaaacctgaccaataagtattgtagcataagcatgctaaaaatcatgcatgggccttgaaaatatttggtagtgattcg |
2018662 |
T |
|
| Q |
211 |
gatgaacaacattcatctgaaaattaatgagaggcatttgcttattatttgtcagaaatttaacagaattaagcgaagttgtatgcttaaatgctttaat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
2018661 |
gatgaacaacattcatctgaaaattaatgagagacatttgcttattatttgtcagaaatttaacagaattcagtgaagttgtatgcttaaatgctttaat |
2018562 |
T |
|
| Q |
311 |
tttttaaagttgaacagaaccacgagacatgcttccnnnnnnnnc-ttcacttcttccattcttggatagaattgcatctatagaacaaacaaaagaaat |
409 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2018561 |
ttttcaaagttgaacagaaccacgagacatgcttcattttttttctttcacttcttccattattggatagaattgcatctatagaacaaacaaaagaaat |
2018462 |
T |
|
| Q |
410 |
cttcaatgaaggttgtcaagttatggattggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaaataacctcagtga |
509 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
2018461 |
cttcaatgaaggttgtcaagatatggatcggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatactatttaaataacctc--tga |
2018364 |
T |
|
| Q |
510 |
tacagtattga |
520 |
Q |
| |
|
|||| |||||| |
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| T |
2018363 |
tacaatattga |
2018353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 141 - 521
Target Start/End: Complemental strand, 2021287 - 2020914
Alignment:
| Q |
141 |
ccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaacaacattcatctgaaaattaatga |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |
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| T |
2021287 |
ccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaatcacattcaactgaaaattaacga |
2021188 |
T |
|
| Q |
241 |
gaggcatttgcttattatttgtcagaaatttaacagaattaagcgaagttgtatgcttaaatgctttaattttttaaagttgaacagaaccacgagacat |
340 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||| ||||| | |
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| T |
2021187 |
gaggcatttgcctattatttgtcagaaattgaacagaattgagcgaagttgtatgcttaaatgattaaatttttttaagttgaacagaaccgcgagatgt |
2021088 |
T |
|
| Q |
341 |
gcttccnnnnnnnncttcacttcttccattcttggatagaattgcatctatagaacaaacaaaagaaatcttcaatgaaggttgtcaagttatggattgg |
440 |
Q |
| |
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||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| |
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| T |
2021087 |
gcttc--atgatttttttacatcttccattcttggatagaattgcatctatagaacaaacaaaagaaatcttcaataaaggttctcaatttatggattga |
2020990 |
T |
|
| Q |
441 |
ttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaaataacctcagtgatacagtattgac |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
2020989 |
ttattcatttcttaattttcttttgaaatgca---acatgtaaaaatactatttaaataacctc--tgacacagtattgac |
2020914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 166 - 330
Target Start/End: Complemental strand, 1989592 - 1989427
Alignment:
| Q |
166 |
gctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaacaacattcatctgaaaattaatgagaggcatttgcttattatttgtcag |
265 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||| |
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| T |
1989592 |
gctaaaaataatgcatggaacttgaaaatatttagtagtgattcagatgaacaacattcatctgaaaattaatga-ttgcatttgcctattatttctcaa |
1989494 |
T |
|
| Q |
266 |
aaatttaacagaa--ttaagcgaagttgtatgcttaaatgctttaattttttaaagttgaacagaac |
330 |
Q |
| |
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||||| || |||| || |||||||||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
1989493 |
aaattgaatagaattttgagcgaagttgtatgctaaaatgatttaattttttaaagttaaacagaac |
1989427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 418 - 521
Target Start/End: Complemental strand, 1989351 - 1989247
Alignment:
| Q |
418 |
aaggttgtcaa-gttatggattggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaaataacctcagtgatacagta |
516 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||| |||| ||| ||| |||||||||||||||||||||| |||| |
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|
| T |
1989351 |
aaggttgtcaaagttatggattgattattaatttcttaattttcttttcaaatgcaacaacagctaacaatgctatttaaataacctcagtgataaagta |
1989252 |
T |
|
| Q |
517 |
ttgac |
521 |
Q |
| |
|
|||| |
|
|
| T |
1989251 |
ctgac |
1989247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 1989776 - 1989679
Alignment:
| Q |
20 |
aaggatcatcattcatcaatgtgacaaaaatgtttgttccaattatttcaaaatgttacagaatgcaatagcaaatgatcgaaaaacatgaaaagtat |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| || ||| |||| ||||| | |||||||| |
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|
| T |
1989776 |
aaggatcatcattcatcaatgatacaaaaaagtttgttccaattatttcaaaatgttacacaatgcaacagtaaaagatcataaaacttaaaaagtat |
1989679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 2021452 - 2021348
Alignment:
| Q |
12 |
acagatccaaggatcatcattcatcaatgtgacaaaaatgtttgttccaattatttcaaaatgttacagaatgcaatagcaaatgatcgaaaaacatgaa |
111 |
Q |
| |
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|||||||||||||| | ||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||| ||||| |||| | ||||| |||| |
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| T |
2021452 |
acagatccaaggataaccattcatcaatgttacaaaaaaatttgttccaatgatttcaaaatgttacacaatgcaacagcaattgattg-aaaacttgaa |
2021354 |
T |
|
| Q |
112 |
aagtat |
117 |
Q |
| |
|
|||||| |
|
|
| T |
2021353 |
aagtat |
2021348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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