View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16124_low_11 (Length: 496)

Name: NF16124_low_11
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16124_low_11
NF16124_low_11
[»] chr7 (16 HSPs)
chr7 (18-486)||(27249398-27249867)
chr7 (208-331)||(27282187-27282310)
chr7 (218-331)||(27296620-27296733)
chr7 (208-331)||(27272117-27272239)
chr7 (378-473)||(27243439-27243532)
chr7 (403-486)||(27271901-27271984)
chr7 (398-486)||(27282012-27282100)
chr7 (18-81)||(27282409-27282472)
chr7 (276-331)||(27243609-27243664)
chr7 (407-486)||(27296480-27296559)
chr7 (276-331)||(27302040-27302095)
chr7 (18-81)||(27243872-27243934)
chr7 (276-331)||(27305058-27305113)
chr7 (425-474)||(27301870-27301919)
chr7 (416-482)||(27304713-27304783)
chr7 (419-463)||(27165886-27165930)
[»] chr1 (7 HSPs)
chr1 (74-331)||(14889212-14889463)
chr1 (18-173)||(14883531-14883685)
chr1 (209-331)||(14883689-14883812)
chr1 (408-482)||(14883963-14884037)
chr1 (408-482)||(14889614-14889688)
chr1 (323-366)||(14883844-14883887)
chr1 (323-366)||(14889495-14889538)


Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 27249867 - 27249398
Alignment:
Q  18 aattcaatgtaagaattaagagagatgattgtaaatccaaatgtccatcatatattgaatatttcgatctgaaacatttaaggtttaaatttaattatac 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27249867 aattcaatgtaagaattaagagagatgattgtaaatcaaaatgtccatcatatattgaatatttcgatctgaaaaatttaaggtttaaatttaattatac 27249768  T
Q  118 acagtgatccatagtggagattcagtaattacaacttacaacagtagaaattaagctatccnnnnnnnnngtt----gtaagactaaagtcatcccttta 213  Q
    ||||||||||||||||| ||||||||   ||||||||||||| ||||||||||||||||||          ||    |||||| ||||||||||||||||    
T  27249767 acagtgatccatagtggggattcagt---tacaacttacaaccgtagaaattaagctatccttttttttttttttttgtaagagtaaagtcatcccttta 27249671  T
Q  214 ttccgtctgtattggttattaccacaaaccaagtattcgttattcattaagcactaacccttcaagctgctcgatactagtttaccctgcaattagtaaa 313  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27249670 ttctgtctgtattggttattaccacaaaccaagtattccttattcattaagcactaacccttcaagctgctcgatactagtttaccctgcaattagtaaa 27249571  T
Q  314 gtgaaattgatattagttcctaaaaaacacacaaacatgtaatctagtccctacaacacaaccgattatataaattttacgcgtaatagtgtacatatga 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||    
T  27249570 gtgaaattgatattagttcctaaaaaacacacaaacatgtaatctagtccctacaacacagcagattatataaattttacgcgtaataatgtacatatga 27249471  T
Q  414 aatagaaaaggagggttgatggtgagagatgtacttgttgcagtccatattagggctaataatatagcctatg 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27249470 aatagaaaaggagggttgatggtgagagatgtacttgttgcagtccatgttagggctaataatatagcctatg 27249398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 208 - 331
Target Start/End: Complemental strand, 27282310 - 27282187
Alignment:
Q  208 cctttattccgtctgtattggttattaccacaaaccaagtattcgttattcattaagcactaacccttcaagctgctcgatactagtttaccctgcaatt 307  Q
    ||||||||| ||||||||||||||||| |||||||||||||||  ||||| | ||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  27282310 cctttattctgtctgtattggttattagcacaaaccaagtattacttattgaataagcaccaacccttcaagctgctcaatactagtttatcctgcaatt 27282211  T
Q  308 agtaaagtgaaattgatattagtt 331  Q
    ||||||||||||||||||||||||    
T  27282210 agtaaagtgaaattgatattagtt 27282187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 218 - 331
Target Start/End: Complemental strand, 27296733 - 27296620
Alignment:
Q  218 gtctgtattggttattaccacaaaccaagtattcgttattcattaagcactaacccttcaagctgctcgatactagtttaccctgcaattagtaaagtga 317  Q
    ||||||||||||||||| |||||||||||||||  ||||||| ||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  27296733 gtctgtattggttattagcacaaaccaagtattacttattcactaagcaccaacccttcaagcagctcaatactagtttatcctgcaattagtaaagtga 27296634  T
Q  318 aattgatattagtt 331  Q
    ||||||||||||||    
T  27296633 aattgatattagtt 27296620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 208 - 331
Target Start/End: Complemental strand, 27272239 - 27272117
Alignment:
Q  208 cctttattccgtctgtattggttattaccacaaaccaagtattcgttattcattaagcactaacccttcaagctgctcgatactagtttaccctgcaatt 307  Q
    ||||||||| |||| |||||||| |||||||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||    
T  27272239 cctttattctgtctatattggtt-ttaccacaaaccaagtattacttattcattaagcaccaacccttcaagctgctcaatactagggtaccctgcaatt 27272141  T
Q  308 agtaaagtgaaattgatattagtt 331  Q
    |||| |||||||||||||||||||    
T  27272140 agtatagtgaaattgatattagtt 27272117  T

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Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 27243532 - 27243439
Alignment:
Q  378 attatataaattttacgcgtaatagtgtacatatgaaatagaaaaggagggttgatggtgagagatgtacttgttgcagtccatattagggctaat 473  Q
    |||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  27243532 attatataaattttacga--aatagtgtgcatatgaaatagaaaaggagggttgatggtgagagatgtacttgctgcaatccatatcagggctaat 27243439  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 403 - 486
Target Start/End: Complemental strand, 27271984 - 27271901
Alignment:
Q  403 tgtacatatgaaatagaaaaggagggttgatggtgagagatgtacttgttgcagtccatattagggctaataatatagcctatg 486  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||    
T  27271984 tgtatatatgaaatagaaaaagagggttgatggtgagagatgtacgagttgcagtccatgttagggcgaataatatagcctatg 27271901  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 486
Target Start/End: Complemental strand, 27282100 - 27282012
Alignment:
Q  398 aatagtgtacatatgaaatagaaaaggagggttgatggtgagagatgtacttgttgcagtccatattagggctaataatatagcctatg 486  Q
    |||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||   |||||||||   ||||||||||    
T  27282100 aataatgtatatatgaaatagaaaaagagggttgatggtgagagatgtacttgctgcagtccatgccagggctaatctcatagcctatg 27282012  T

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Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 27282472 - 27282409
Alignment:
Q  18 aattcaatgtaagaattaagagagatgattgtaaatccaaatgtccatcatatattgaatattt 81  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||||    
T  27282472 aattcaatgtaagaattaagagagatgatggtaaatccaaatgtgcatcagatattgattattt 27282409  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 27243664 - 27243609
Alignment:
Q  276 caagctgctcgatactagtttaccctgcaattagtaaagtgaaattgatattagtt 331  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||    
T  27243664 caagctgctcagtactaatttaccctgcaattagtaaagtgaaattgatattagtt 27243609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 486
Target Start/End: Complemental strand, 27296559 - 27296480
Alignment:
Q  407 catatgaaatagaaaaggagggttgatggtgagagatgtacttgttgcagtccatattagggctaataatatagcctatg 486  Q
    ||||||||||||||||  |||||||||||||||||| ||||||| |||||||||| | |||||||||   ||||||||||    
T  27296559 catatgaaatagaaaaatagggttgatggtgagagacgtacttgctgcagtccatgtcagggctaatctcatagcctatg 27296480  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 27302095 - 27302040
Alignment:
Q  276 caagctgctcgatactagtttaccctgcaattagtaaagtgaaattgatattagtt 331  Q
    ||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||    
T  27302095 caagctgctcgattctagtttaccctgcaatgagtaaagcgaaattgacattagtt 27302040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 27243934 - 27243872
Alignment:
Q  18 aattcaatgtaagaattaagagagatgattgtaaatccaaatgtccatcatatattgaatattt 81  Q
    |||| ||||||||||||||||||||||    |||||||||||||||||| ||||||||||||||    
T  27243934 aattaaatgtaagaattaagagagatggcgctaaatccaaatgtccatc-tatattgaatattt 27243872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 27305113 - 27305058
Alignment:
Q  276 caagctgctcgatactagtttaccctgcaattagtaaagtgaaattgatattagtt 331  Q
    |||||||||| || ||||||||||||||||| ||||||| |||| ||| |||||||    
T  27305113 caagctgctcaattctagtttaccctgcaatgagtaaagggaaactgacattagtt 27305058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 27301919 - 27301870
Alignment:
Q  425 agggttgatggtgagagatgtacttgttgcagtccatattagggctaata 474  Q
    ||||||| ||||||||||||||||||| ||||||||| | ||||| ||||    
T  27301919 agggttggtggtgagagatgtacttgtcgcagtccatgtcagggccaata 27301870  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 482
Target Start/End: Complemental strand, 27304783 - 27304713
Alignment:
Q  416 tagaaaaggagggttgatggtgagagat----gtacttgttgcagtccatattagggctaataatatagcc 482  Q
    ||||||| ||||||||||||||||||||    ||||||| |||||||||| | ||||||||| | ||||||    
T  27304783 tagaaaaagagggttgatggtgagagatgtacgtacttgctgcagtccatgtcagggctaatcacatagcc 27304713  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 463
Target Start/End: Complemental strand, 27165930 - 27165886
Alignment:
Q  419 aaaaggagggttgatggtgagagatgtacttgttgcagtccatat 463  Q
    |||| |||||||||| |||||||||||||||||| |||| |||||    
T  27165930 aaaaagagggttgatagtgagagatgtacttgttacagttcatat 27165886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 74 - 331
Target Start/End: Original strand, 14889212 - 14889463
Alignment:
Q  74 gaatatttcgatctgaaacatttaaggtttaaatttaattatacacagtgatccatagtggagattcagtaattacaacttacaacagtagaaattaagc 173  Q
    |||||||| |||||||||||||| || ||| | |||||||||| | |||||||| |||||| ||||||||   ||||| |||||||   |||||||||||    
T  14889212 gaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagt---tacaagttacaaccagagaaattaagc 14889308  T
Q  174 tatccnnnnnnnnngttgtaagactaaagtcatcc-ctttattccgtctgtattggttattaccacaaaccaagtatt-cgttattcattaagcactaac 271  Q
     |||           || ||||| ||||||||||| |||||||| |||  ||||||||||||||  ||||||| |||| | |||||||||||||   |||    
T  14889309 -atcttttttt----ttataagagtaaagtcatcctctttattctgtcgatattggttattaccgaaaaccaattattactttattcattaagcttcaac 14889403  T
Q  272 ccttcaagctgctcgatactagtttaccctgcaattagtaaagtgaaattgatattagtt 331  Q
    ||| ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  14889404 cctgcaagctgctcagtactagtttaccctgcaattagtaaaatgaaattgatattagtt 14889463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 14883531 - 14883685
Alignment:
Q  18 aattcaatgtaagaattaagagagatgattgtaaatccaaatgtccatcatatattgaatatttcgatctgaaacatttaaggtttaaatttaat--tat 115  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||| |||||||||||||| |  ||| | ||| ||  |||    
T  14883531 aattcaatgtaagaattaagagagatggcagtaaatccaaatgtccatcatatatttaatattttgatctgaaacatttcaaattttatttttattatat 14883630  T
Q  116 acacagtgatccatagtggagattcagtaattacaacttacaacagtagaaattaagc 173  Q
    | | |||||||| |||||| |||||||   |||||||||||||| | |||||||||||    
T  14883631 atatagtgatccctagtggggattcag---ttacaacttacaactgaagaaattaagc 14883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 14883689 - 14883812
Alignment:
Q  209 ctttattccgtctgtattggttattaccacaaaccaagtatt-cgttattcattaagcactaacccttcaagctgctcgatactagtttaccctgcaatt 307  Q
    |||||||| ||| |||||||||||||||| ||||||| |||| | ||||||||||| |   |||||| ||||||||||  ||||||||||||||||||||    
T  14883689 ctttattctgtcggtattggttattaccaaaaaccaattattactttattcattaaccttcaaccctgcaagctgctcagtactagtttaccctgcaatt 14883788  T
Q  308 agtaaagtgaaattgatattagtt 331  Q
    |||||| |||||||||||||||||    
T  14883789 agtaaaatgaaattgatattagtt 14883812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 482
Target Start/End: Original strand, 14883963 - 14884037
Alignment:
Q  408 atatgaaatagaaaaggagggttgatggtgagagatgtacttgttgcagtccatattagggctaataatatagcc 482  Q
    ||||||||||||||| |||||||||||||||||||| |||||| |||||||||| | ||||||||| | ||||||    
T  14883963 atatgaaatagaaaaagagggttgatggtgagagatatacttgctgcagtccatgtcagggctaatcacatagcc 14884037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 482
Target Start/End: Original strand, 14889614 - 14889688
Alignment:
Q  408 atatgaaatagaaaaggagggttgatggtgagagatgtacttgttgcagtccatattagggctaataatatagcc 482  Q
    ||||||||||||||| |||||||||||||||||||| |||||| |||||||||| | ||||||||| | ||||||    
T  14889614 atatgaaatagaaaaagagggttgatggtgagagatatacttgctgcagtccatgtcagggctaatcacatagcc 14889688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 14883844 - 14883887
Alignment:
Q  323 atattagttcctaaaaaacacacaaacatgtaatctagtcccta 366  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||    
T  14883844 atattagttcctaaaaaaaacacacacatgtattctagtcccta 14883887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 14889495 - 14889538
Alignment:
Q  323 atattagttcctaaaaaacacacaaacatgtaatctagtcccta 366  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||    
T  14889495 atattagttcctaaaaaaaacacacacatgtattctagtcccta 14889538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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