View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16124_low_13 (Length: 483)
Name: NF16124_low_13
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 40549413 - 40548950
Alignment:
| Q |
18 |
atacataaattaaattttgtaggataccaatttggtataatgcgaaactatttctggtggcatggctagttttgccgcagttcaaaggtgctgctttctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40549413 |
atacataaattaaattttgtaggataccaatttggtataatgcgaaactatttctggtggcatggctagttttgccgcagttcaaaggtgctgctttctt |
40549314 |
T |
|
| Q |
118 |
gtatgaaaagtttgtgagaccacacgttcgaaaatacatcacacctaagaaggtgagttagggaattttttgttttattaaatttcttttgatgatttaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40549313 |
gtatgaaaagtttgtgagaccacacgttcgaaaatacatcacacctaagaaggtgagttagggaattttt-gttttattaaatttcttttgatgatttaa |
40549215 |
T |
|
| Q |
218 |
atgattcaatttctgatacgattagtcatggtgttatgatggtgaataggtgtaaaacgattcatgaggcatactgaaaaggaagaagaaggatggtgct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40549214 |
atgattcaatttctgatacgattagtcatggtgttatgatggtgaataggtgtaaaacgattcatgaggcatactgaaaaggaagaagaaggatggtgct |
40549115 |
T |
|
| Q |
318 |
gctgagtaggatgactttaagctttggaccaaagattgaattcgttata--------------aacgagcttattatttagtatttgattagaaattaat |
403 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40549114 |
gctgagcaggatgactttaagctttggaccaaagattgaattcgttttagtttttggtcttgggacgagcttattatttagtatttgattagaaattaat |
40549015 |
T |
|
| Q |
404 |
gctaattgggtttatgttcatctctaatgtatggctttagccacagtttcaaattgttttttcat |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40549014 |
gctaattgggtttatgttcatctctaatgtatggctttagccacagtttcaaattgttgtttcat |
40548950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University