View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_16 (Length: 468)
Name: NF16124_low_16
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 51190519 - 51190954
Alignment:
| Q |
19 |
ctgatgtcactttcttcaaccatatacctgcaaagaggacaagtagagtgactttcaagccacttgtcaatacaattcatatgaaaagcatgcttgcatt |
118 |
Q |
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| T |
51190519 |
ctgatgtcactttcttcaaccatatacctgcaaagaggacaagtagagtgactttcaagccacttgtcaatacaattcatatgaaaagcatgcttgcatt |
51190618 |
T |
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| Q |
119 |
tcggcaacaatctcagaatctcctcgtcttcaaatttcgataaacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaa |
218 |
Q |
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| T |
51190619 |
tcggcaacaatctcagaatctcctcgtcttcaaatttcgataaacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaa |
51190718 |
T |
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| Q |
219 |
aggaagtgtttcaattactttttgttcaacgccagaatttatagacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggtttaga |
318 |
Q |
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| T |
51190719 |
aggaagtgtttcaattactttttgttcaacgccagaatttatagacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggtttaga |
51190818 |
T |
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| Q |
319 |
agatgaataggagtaacacgacagaatttgacatatacaagtaagataaaagttaggaaaaacattatggaaagtactattattacaacacctttacttg |
418 |
Q |
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| T |
51190819 |
agatgaataggagtaacacgacagaatttgacatatacaagtaagataaaagttaggaaaaacattatggaaagtactattattacaacacctttacttg |
51190918 |
T |
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| Q |
419 |
gagtaacaccttttggtaactctgccatgttctgtg |
454 |
Q |
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| T |
51190919 |
gagtaacaccttttggtaactctgccatgttctgtg |
51190954 |
T |
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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 233
Target Start/End: Complemental strand, 33512540 - 33512353
Alignment:
| Q |
46 |
ctgcaaagaggacaagtagagtgactttcaagccacttgtcaatacaattcatatgaaaagcatgcttgcatttcggcaacaatctcagaatctcctcgt |
145 |
Q |
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| T |
33512540 |
ctgcaaataggacaacttgagtgtttctcaagccaatgatcaatacaatcaatatgaaaagcatgtttacattttggtaacaatcttaaaatttctatgt |
33512441 |
T |
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| Q |
146 |
cttcaaatttcgataaacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaaaggaagtgtttcaat |
233 |
Q |
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| T |
33512440 |
cttcgaatttcgacaaacatattgaacattccaacccttgttttgaacctttgagagaagagaatttgaaaaaaggaagtgattcaat |
33512353 |
T |
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