View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16124_low_17 (Length: 452)

Name: NF16124_low_17
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16124_low_17
NF16124_low_17
[»] chr2 (3 HSPs)
chr2 (20-409)||(39693579-39693970)
chr2 (396-443)||(39693523-39693570)
chr2 (20-64)||(2336696-2336740)
[»] chr6 (1 HSPs)
chr6 (28-65)||(10498844-10498881)
[»] chr4 (2 HSPs)
chr4 (31-60)||(50400019-50400048)
chr4 (20-64)||(29802613-29802657)
[»] chr8 (1 HSPs)
chr8 (20-64)||(11970314-11970358)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 39693970 - 39693579
Alignment:
Q  20 ttggacaccatatcttaacccaaaatcttaagacattgagtttatactctcacttataaataacgtgagatttttaactcac--ttgccacgcattaggg 117  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  39693970 ttggacaccacatcttaacccaaaatcttaaggcattgagtttatgctctcacttataaataacgtgagatttttaactcacacttgctacgcattaggg 39693871  T
Q  118 tctgacatcaaaaagtagcactccactatctgcgactaaaatctacgaccttgattcttcatcatttctattgaaacaaaaagaaaatcatcacaacaat 217  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39693870 tttgacatcaaaaagtagcactccactatctgcgactaaaatctacgaccttgattcttcatcatttctattgaaacagaaagaaaatcatcacaacaat 39693771  T
Q  218 ggactccaacaccaaaagcaatttctccactcattaatcttctatgaactttatcaaccatgcatttagagagaattaaccatgattttcaagtgttcat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693770 ggactccaacaccaaaagcaatttctccactcattaatcttctatgaactttatcaaccatgcatttagagagaattaaccatgattttcaagtgttcat 39693671  T
Q  318 gtatgtggtgtcattgtaaacttcttgtaaagttgatcaatcacaaatcaacatcagttgtaagcttgacataaccaaaccaaagtacacct 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693670 gtatgtggtgtcattgtaaacttcttgtaaagttgatcaatcacaaatcaacatcagttgtaagcttgacataaccaaaccaaagtacacct 39693579  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 39693570 - 39693523
Alignment:
Q  396 accaaagtacacctagtgctttgttctaggcttttttattagtataat 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693570 accaaagtacacctagtgctttgttctaggcttttttattagtataat 39693523  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 2336740 - 2336696
Alignment:
Q  20 ttggacaccatatcttaacccaaaatcttaagacattgagtttat 64  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||    
T  2336740 ttggacaccacatcttaacccaaaatcttaaggcattgaatttat 2336696  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 10498844 - 10498881
Alignment:
Q  28 catatcttaacccaaaatcttaagacattgagtttata 65  Q
    |||||||||||||||||  |||||||||||||||||||    
T  10498844 catatcttaacccaaaactttaagacattgagtttata 10498881  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 50400048 - 50400019
Alignment:
Q  31 atcttaacccaaaatcttaagacattgagt 60  Q
    ||||||||||||||||||||||||||||||    
T  50400048 atcttaacccaaaatcttaagacattgagt 50400019  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 29802657 - 29802613
Alignment:
Q  20 ttggacaccatatcttaacccaaaatcttaagacattgagtttat 64  Q
    ||||||||||||||||||| ||||| |||||| ||||| ||||||    
T  29802657 ttggacaccatatcttaacacaaaaccttaaggcattgggtttat 29802613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 11970358 - 11970314
Alignment:
Q  20 ttggacaccatatcttaacccaaaatcttaagacattgagtttat 64  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  11970358 ttgggcaccacatcttaacccaaaatctaaaggcattgagtttat 11970314  T

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