View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_18 (Length: 418)
Name: NF16124_low_18
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 194 - 401
Target Start/End: Complemental strand, 8784662 - 8784452
Alignment:
| Q |
194 |
tcctaatactagatacaataacaacaa---ggctctaatcctagatataagagatttcaattttaaatttttcgcattaactccaaacatgactcgtcaa |
290 |
Q |
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| T |
8784662 |
tcctaatactagatacaacaacaacaacaaggctctaatcctagatataagagatttcaattttaaatttttcgcattaactccaaacatgactcgtcaa |
8784563 |
T |
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| Q |
291 |
gccaaggctgaaatgatcccatgtgacacacgttctgcaaaaatcgacagacaaaagtatatcaagataacttccattgcaagcagttcacaacagttag |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8784562 |
gccaaggctgaaatgatcccatgtgacacacgttctgcaaaaatcgacagacaaaagtacatcaagataacttccattgcaagcagttcacaacagttag |
8784463 |
T |
|
| Q |
391 |
catagatagtg |
401 |
Q |
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||||||||||| |
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| T |
8784462 |
catagatagtg |
8784452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 225 - 388
Target Start/End: Complemental strand, 8790704 - 8790541
Alignment:
| Q |
225 |
ctaatcctagatataagagatttcaattttaaatttttcgcattaactccaaacatgactcgtcaagccaaggctgaaatgatcccatgtgacacacgtt |
324 |
Q |
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|||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| || |
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| T |
8790704 |
ctaatcctagatataagagattccaattttacagttttcgcattaactccaaacaagactcgtcaagccaaggctgaaatgaacccatgtggcacacatt |
8790605 |
T |
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| Q |
325 |
ctgcaaaaatcgacagacaaaagtatatcaagataacttccattgcaagcagttcacaacagtt |
388 |
Q |
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| T |
8790604 |
ctgcaaaaatcggcagacaaaagtacatcaaaataactttcattgcgagcaattcacaacagtt |
8790541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 366
Target Start/End: Complemental strand, 8777879 - 8777740
Alignment:
| Q |
227 |
aatcctagatataagagatttcaattttaaatttttcgcattaactccaaacatgactcgtcaagccaaggctgaaatgatcccatgtgacacacgttct |
326 |
Q |
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|||| |||||||||||||| || ||||| |||||| ||| || ||| |||||||| |||||| ||||||||||||| ||||| | | | ||| |||| |
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| T |
8777879 |
aatcatagatataagagatgccatttttatattttttgcaatatctctaaacatgattcgtcacgccaaggctgaaaccttcccaagaggctcactttct |
8777780 |
T |
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| Q |
327 |
gcaaaaatcgacagacaaaagtatatcaagataacttcca |
366 |
Q |
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|||||||| |||||||||||||| ||||| |||||||||| |
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| T |
8777779 |
gcaaaaatggacagacaaaagtacatcaaaataacttcca |
8777740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 383
Target Start/End: Original strand, 9584232 - 9584337
Alignment:
| Q |
278 |
catgactcgtcaagccaaggctgaaatgatcccatgtgacacacgttctgcaaaaatcgacagacaaaagtatatcaagataacttccattgcaagcagt |
377 |
Q |
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||||| ||||||||||||||||| |||| ||||| || ||||| || |||||||| |||||| |||||| ||||||||||||||||| ||||||| | |
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| T |
9584232 |
catgattcgtcaagccaaggctgcaatgttcccaaatggcacacattatgcaaaaacggacagagaaaagtgcatcaagataacttccatcgcaagcaat |
9584331 |
T |
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| Q |
378 |
tcacaa |
383 |
Q |
| |
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|||||| |
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| T |
9584332 |
tcacaa |
9584337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 8790780 - 8790728
Alignment:
| Q |
127 |
tatagttcagtgatgagtttaattgcacataaatagtcttgcctgtgcagatt |
179 |
Q |
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|||||||||||||| |||||||||| ||||||| | | |||| |||||||||| |
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| T |
8790780 |
tatagttcagtgattagtttaattgtacataaacattgttgcatgtgcagatt |
8790728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 227 - 392
Target Start/End: Original strand, 2539900 - 2540065
Alignment:
| Q |
227 |
aatcctagatataagagatttcaattttaaatttttcgcattaactccaaacatgactcgtcaagccaaggctgaaatgatcccatgtgacacacgttct |
326 |
Q |
| |
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|||||||||||||| ||||| || ||||| ||||| |||| || ||||||||||| |||||| |||||||||||||| ||| | | | ||| ||| |
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| T |
2539900 |
aatcctagatataaaagattccatttttacattttccgcaatatctccaaacatgtttcgtcacgccaaggctgaaatcttccagcgaggctcactctct |
2539999 |
T |
|
| Q |
327 |
gcaaaaatcgacagacaaaagtatatcaagataacttccattgcaagcagttcacaacagttagca |
392 |
Q |
| |
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||| |||| |||||| |||| || ||||| ||||||||||||||||||| || ||||||||||||| |
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| T |
2540000 |
gcacaaatggacagagaaaaatacatcaacataacttccattgcaagcaattaacaacagttagca |
2540065 |
T |
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