View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_19 (Length: 403)
Name: NF16124_low_19
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 21624045 - 21623778
Alignment:
| Q |
1 |
ccacaaaaaacacaaatcctctttaactttgattctttcatctcactttcttcctccatctctttatttcagatcaattccaa-ccttcacaatttgtat |
99 |
Q |
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| T |
21624045 |
ccacaaaaaacacaaatcctcttaaactttgattctttcatctcactttcttcctccatctctttatttcagatcaattccaaaccttcacaatttgtat |
21623946 |
T |
|
| Q |
100 |
gcacaacacctatatatagagaaatgtagaagcatgattacatgatgagcaataacgatgatgactccttacaaattgtacacgagggaagaattgatac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21623945 |
gcacaacacctatatatagagaaatgtagaagcatgattacatgatgagcaatagcgatgatgactccttacaaattgtacacgagggaagaattgatac |
21623846 |
T |
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| Q |
200 |
acataattcataacacagacgtgtgtgtttgttttctactttaattaatatggtcccctgattgtacc |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21623845 |
acataattcataacacagacgtgtgtgtttgttttctactttaattaatatggtcccctgattgtacc |
21623778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 21623741 - 21623650
Alignment:
| Q |
304 |
cccgtggtcctatgtaaagatgattgtgtggtttggtctcaccaaattaagtatttgaataggaaccttaatatgattagatgttgatgatg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21623741 |
cccgtggtcctatgtaaagatgattgtgtggtttggtctcaccaaattaagtatttgaataggaaccttaatatgattagatgttgatgatg |
21623650 |
T |
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