View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_20 (Length: 400)
Name: NF16124_low_20
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 24570140 - 24569812
Alignment:
| Q |
1 |
cagagacaaagcataacagaagccctctatagaaaggtgcacaacaaaaagctgcctattc-caacaacacacccctcctgcactgtgaacaaaccctcc |
99 |
Q |
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| T |
24570140 |
cagacacaaagcataacagaagtcctctatcgaaaggtgcacaacaaaaagctacctattgacaacaacaaacccctcctgcactgtgaaaaaaccctcc |
24570041 |
T |
|
| Q |
100 |
aatcaataattatagcctagtaaaaaccactaacgcagcaacatattcactccatatcatcttaggaggcaatttttaggattccaaaaccattcataat |
199 |
Q |
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| T |
24570040 |
gatcaataatta--gcctagtaaaaaccactaacgcagcaacatattcactccatatcatcttaggaggcaatttttaggattccaaaaccactcataat |
24569943 |
T |
|
| Q |
200 |
ccaaaaagttggaaccttaaatctagccaaagtctatcgtcaagacaaagccttaatttcctccaccaaattcctcctccttaaatgtattcttgaagat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24569942 |
ccaaaaagttggaaccttaaatctagccaaagtctatcgtcaagacaaagccttaatttcctccaccaaattcctcctccttaaatgtattcttgaagat |
24569843 |
T |
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| Q |
300 |
tatctgattacgcacttccaaatcatccaat |
330 |
Q |
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|||||||||||||||||| |||||||||||| |
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| T |
24569842 |
tatctgattacgcacttctaaatcatccaat |
24569812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 24569761 - 24569697
Alignment:
| Q |
331 |
acgcctcactactccaacagtccacatgaacgaacaaatttggaagagtgataaacgtaaaatct |
395 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24569761 |
acgcctcactactccaacattccacatgaacgaacaaatttggaagagtgataaacgtaaaatct |
24569697 |
T |
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