View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_22 (Length: 387)
Name: NF16124_low_22
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 134 - 373
Target Start/End: Original strand, 9382263 - 9382502
Alignment:
| Q |
134 |
aaagatacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattt |
233 |
Q |
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| T |
9382263 |
aaagatgcgacttttacataaaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattt |
9382362 |
T |
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| Q |
234 |
tgatcctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttgttcttcctcaactctt |
333 |
Q |
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| T |
9382363 |
tgatcctcagcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttgttcttcctcaactctt |
9382462 |
T |
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| Q |
334 |
ctctcttagtaataatcctttccaccaacgtatcaaacct |
373 |
Q |
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| T |
9382463 |
ctctcttagtaataatcctttccaccaacgtatcaaacct |
9382502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 138 - 373
Target Start/End: Original strand, 9399737 - 9399971
Alignment:
| Q |
138 |
atacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgat |
237 |
Q |
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| T |
9399737 |
atacgacttgtacataaaa-gaaagaagtagagataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgat |
9399835 |
T |
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| Q |
238 |
cctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttgttcttcctcaactcttctct |
337 |
Q |
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| T |
9399836 |
cctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttgttcttcctcaactcttctct |
9399935 |
T |
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| Q |
338 |
cttagtaataatcctttccaccaacgtatcaaacct |
373 |
Q |
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| T |
9399936 |
tttactaataatcctttccaccaatgtatcaaacct |
9399971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 9382090 - 9382140
Alignment:
| Q |
3 |
aagggaatatttgttaatcaaatccgtaccaattaagtttgctaaaactgg |
53 |
Q |
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| T |
9382090 |
aagggaatatttgttattcaaatccgtaccaattaagtttgctaaaactgg |
9382140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9399576 - 9399617
Alignment:
| Q |
1 |
caaagggaatatttgttaatcaaatccgtaccaattaagttt |
42 |
Q |
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| T |
9399576 |
caaagggaatatttgttattcaaatccgtaccaattaagttt |
9399617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 9382171 - 9382204
Alignment:
| Q |
77 |
tgataacccacttgggttgatatgatgatattag |
110 |
Q |
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| T |
9382171 |
tgataacccacttgggttgatatgatgatattag |
9382204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 23243915 - 23243822
Alignment:
| Q |
181 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcggcacaatcaagcaatatatcaagaaagtctct |
274 |
Q |
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| T |
23243915 |
ttaccataatcaaggccttaacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
23243822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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