View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_30 (Length: 346)
Name: NF16124_low_30
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 29813518 - 29813858
Alignment:
| Q |
1 |
gtggagagatccgggtcgggcaggatgaaaacgggttgagatggaaatcggagtggctgtcggcggcggacattaaggtatccatccagtcgtcggagtc |
100 |
Q |
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| T |
29813518 |
gtggagagagccgggtcgggcaggatgaaaacgggttgagatggaaatcggagtggctgtcggcggcggacattaaggtatccatccagtcgtcggagtc |
29813617 |
T |
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| Q |
101 |
gaaatcggagaaacggaaggtggtggagtgagggtcgagtggtgaagggaagttgaaagcgggatcggtgttttcaggacccgacccgacttgaaatggg |
200 |
Q |
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| T |
29813618 |
gaaatcggagaaacggaaggtggtggagtgagggtcgagtggtgaagggaaattgaaagcgggatcggtgttttcaggacccgacccgacttgaaatggg |
29813717 |
T |
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| Q |
201 |
tcggtgaaatcggtaggtggaaaagacaaaggtggcagtgatgtagaagaggatactggaatgttgttgttgtgccatggatgtagtgagacagagagag |
300 |
Q |
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| T |
29813718 |
tcggtgaaatcggtaggtggaaaagacaaaggtggcagtgatgtagaagaggatactggaatgttgttgttgtgccatggatgtagtgagacagagagag |
29813817 |
T |
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| Q |
301 |
ggtttgtgatacctaggatgttttggtgatgatgatgatgt |
341 |
Q |
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| T |
29813818 |
gatttgtgatacctaggatgttttggtgatgatgatgatgt |
29813858 |
T |
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