View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_34 (Length: 323)
Name: NF16124_low_34
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 148 - 301
Target Start/End: Complemental strand, 56069644 - 56069491
Alignment:
| Q |
148 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
247 |
Q |
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| T |
56069644 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
56069545 |
T |
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| Q |
248 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactata |
301 |
Q |
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| T |
56069544 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactata |
56069491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 56069810 - 56069678
Alignment:
| Q |
11 |
cacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaa |
110 |
Q |
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| T |
56069810 |
cacagaggtgtaccacaaatggcagaaactggtaagcacacttta----atttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaa |
56069715 |
T |
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| Q |
111 |
tttctcgtttctttccaatttcatcgacgatgtttcc |
147 |
Q |
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| T |
56069714 |
tttctcgtttctttccaatttcatcgacgatttttcc |
56069678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 148 - 291
Target Start/End: Original strand, 38398695 - 38398838
Alignment:
| Q |
148 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
247 |
Q |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggctac |
38398794 |
T |
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| Q |
248 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaat |
291 |
Q |
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| T |
38398795 |
aaccccaatgtcaaccaaaaagatattgaaagggctgctgtaat |
38398838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 38398508 - 38398594
Alignment:
| Q |
11 |
cacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
102 |
Q |
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| T |
38398508 |
cacagaggtgtaccacaattggcagaagctggtaag-acacttta----atctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 10171013 - 10171131
Alignment:
| Q |
155 |
tggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctacaaccctg |
254 |
Q |
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||||| ||||||||||||||||| ||||| || || |||||||||| |||||||| |||||| | | ||||| || ||||||||||||||||| || |
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| T |
10171013 |
tggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaacaaagcgtggcatgtgttgggtcttggctacaatccca |
10171112 |
T |
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| Q |
255 |
atgtcaaccaaaaagatat |
273 |
Q |
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| T |
10171113 |
acgtcaaccaaaaagatat |
10171131 |
T |
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