View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_35 (Length: 317)
Name: NF16124_low_35
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 53240600 - 53240304
Alignment:
| Q |
2 |
ttctattgacaaacgtggtcaattttttagctcagtccaacattaacgctaaagagttgcctacatatccaaaagattgaaacacgattttctgtccaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53240600 |
ttctattgacaaacgtggtcaattttttagctaagtccaacattaacgctaaagagttgcctacatatccaaaagattgaaacacgaatttctgtccaaa |
53240501 |
T |
|
| Q |
102 |
aattgacgcaatcaaaggggtggctccatcgtggtcgttattgaaatcagacagttttaaaatacaaaatactaagttaaaatatgaacttcaattgcca |
201 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53240500 |
aattgacgcaatcaaaggggtggttccatcgtggtcgttattgaaatcagacagttttaaaatacaaaatactaagttaaaatatgaacttcaactgcca |
53240401 |
T |
|
| Q |
202 |
tccaacgatagccgtgaatatactgcatgaccgtagtcaatctcaatccattcgaaaatgaaactttagcatatataggtgttgctctcaacgtgttaaa |
301 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53240400 |
tccaacgacagccgtgaatatactgcatgaccgtagtcaatctcaatccattcgaaaatgaaactttagc----ataggtgttgctctcaacgtgttaaa |
53240305 |
T |
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