View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_36 (Length: 312)
Name: NF16124_low_36
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 29660708 - 29660860
Alignment:
| Q |
18 |
attaagcgcttatagcgtaagtgtttgaatttttataacaaaagataaaataaaataaatctgttttcataagctagcataaagagcatatggaagtaat |
117 |
Q |
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| T |
29660708 |
attaagcgcttatagcgtaagtgtttgaatttttataacaaaagataaaataaaataaatctgttttcataagctagcataaagagcatatggaagtaat |
29660807 |
T |
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| Q |
118 |
ctggaaacaactcatgcatttgtcaaaaactatcttaaacaattccacaagta |
170 |
Q |
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| T |
29660808 |
ctggaaacaacccatgcatttgtcaaaaactatctcaaacaattccacaagta |
29660860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 167 - 307
Target Start/End: Original strand, 29660908 - 29661048
Alignment:
| Q |
167 |
agtatattcattcgtgtagtgcagtccaatttctaccacctgcttcatggatccaaatctccatctataaattcattgaccacacataatgtccttcgat |
266 |
Q |
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| T |
29660908 |
agtatattcattcatgtagtgcagtccaatttctaccacctgcttcatggatccaaatctccatctataaattcattgaccacacataatgtccttcgat |
29661007 |
T |
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| Q |
267 |
ttgtgatccactttgagactctttgctggtttcttctctct |
307 |
Q |
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| T |
29661008 |
ttgtgatccactttgagactctttgctggtttcttatctct |
29661048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 23373408 - 23373361
Alignment:
| Q |
46 |
atttttataacaaaagataaaataaaataaatctgttttcataagcta |
93 |
Q |
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| T |
23373408 |
atttctatatcaaaagataaaataaagtcaatctgttttcataagcta |
23373361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 50319244 - 50319310
Alignment:
| Q |
46 |
atttttataacaaaagataaaataaaataaatctgttttcataagctagcataaagagcatatggaa |
112 |
Q |
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| T |
50319244 |
atttctataacaaaagataaaataaagtcaagttgttttcataagctatcctagagagcttatggaa |
50319310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 1393137 - 1393096
Alignment:
| Q |
46 |
atttttataacaaaagataaaataaaataaatctgttttcat |
87 |
Q |
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| T |
1393137 |
atttatataacaaaagttaaaataaagtaaatctgttttcat |
1393096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 36157954 - 36157912
Alignment:
| Q |
45 |
aatttttataacaaaagataaaataaaataaatctgttttcat |
87 |
Q |
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| T |
36157954 |
aatttttataacaaaagataaaataaaataaaattgttttcat |
36157912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 12407779 - 12407738
Alignment:
| Q |
46 |
atttttataacaaaagataaaataaaataaatctgttttcat |
87 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
12407779 |
atttctataacaaaagataaaataaagtaaatctgttttcat |
12407738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 12242806 - 12242723
Alignment:
| Q |
46 |
atttttataacaaaagataaaataaaataaatctgttttcataagctagcataaagagcatatggaagtaatctggaaacaact |
129 |
Q |
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| T |
12242806 |
atttgtataacaaaagataaaatagagtcaaattgttttcataagctatcttggagagcttatggaagtaagctgaaaacaact |
12242723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 30537064 - 30537022
Alignment:
| Q |
46 |
atttttataacaaaagataaaataaaataaatctgttttcata |
88 |
Q |
| |
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|||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
30537064 |
atttctataacaaaagataaaataaaattaatttgttttcata |
30537022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 50745952 - 50745990
Alignment:
| Q |
46 |
atttttataacaaaagataaaataaaataaatctgtttt |
84 |
Q |
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| T |
50745952 |
atttttataacaaaagataaaataaaatcaaactgtttt |
50745990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 18962156 - 18962114
Alignment:
| Q |
46 |
atttttataacaaaagataaaataaaataaatctgttttcata |
88 |
Q |
| |
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|||||||||||||||||||||||||| | || ||||||||||| |
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| T |
18962156 |
atttttataacaaaagataaaataaagttaaactgttttcata |
18962114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 40280315 - 40280250
Alignment:
| Q |
54 |
aacaaaagataaaataaaataaatctgttttcataagctagcataaagagcatatggaagtaatct |
119 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| | |||||| ||||||| |||||| |
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| T |
40280315 |
aacaaaagataaaataaagtaaaattgttttcataagctatctagaagagcttatggaaataatct |
40280250 |
T |
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