View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_39 (Length: 293)
Name: NF16124_low_39
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 52091641 - 52091913
Alignment:
| Q |
24 |
atattaaaagaaaagatattaaaaacttaaaatatcttttggtatactttatgttatagatctgttggtcttggtttactatttctattgaattcaatgc |
123 |
Q |
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| T |
52091641 |
atattaaaagaaaagatattaaaaacttaaaataccttttggtatactttatgttatagatctgttggtcttggtttactatttctattgaattcaatgc |
52091740 |
T |
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| Q |
124 |
aatgatgtgaactatgaaccaactctatgctatttcaata------------tatatatttgtacaagatactacatgacatatgttttactctaccggt |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52091741 |
aatgatgtgaactatgaaccaactatatgctatttcaatatatgagactgagtatatgtttgtacaagatactacatgacatatgttttactctaccggt |
52091840 |
T |
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| Q |
212 |
gaagtaatatatgatacattaccccttcattaaatatatattaccttaaagtaatatgctattttagtattatct |
286 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52091841 |
gaatta--atatgatacattaccccttcattaaatatatattaccttaaagtaatatgctattttagtattatct |
52091913 |
T |
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