View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_42 (Length: 268)
Name: NF16124_low_42
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 16400724 - 16400959
Alignment:
| Q |
20 |
aagccaaatttgataggacaagtataacaagagcaagtatcgctattccactagaacgatcaactcgcgaataaggctccatcaactcccataaagcact |
119 |
Q |
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| T |
16400724 |
aagccaaatttgataggacaagtataacaagagcaagtatcgctattccactagaacgatcaactcgcgaataaggctccatcaactcccataaagcact |
16400823 |
T |
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| Q |
120 |
tggaattccagttttgttgaatccatctactgtgataaacattccacaaaagaatatcaaaagtgaatatgaaacctgtatcaacatgaaaaagaaaatt |
219 |
Q |
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| T |
16400824 |
tggaattccagttttgttgaatccatctactgtgataaacattccacaaaagaatatcaaaagtgaatatgaaacctgtatcaacatgaaaaagaaaatt |
16400923 |
T |
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| Q |
220 |
ctaagagatttgttcaatcttcaactagcacaagaa |
255 |
Q |
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| T |
16400924 |
ctaagatatttgttcaatcttcaactagcacaagaa |
16400959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 14306251 - 14306012
Alignment:
| Q |
20 |
aagccaaatttgataggacaagtataacaagagcaagtatcgctattccactagaacgatcaactcgcgaataaggctccatcaactcccataaagcact |
119 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
14306251 |
aagccaaatttgataggacaagtataacgagagaaagtatcgctattccactagaacgatcaactcgtgaataaggctccatcatctcccataaagcact |
14306152 |
T |
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| Q |
120 |
tggaattccagttttgttgaatccatctactgtgataaacattccacaaaagaatatcaaaagtgaatatgaaacctgtatcaacatgaa-aaagaaaat |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
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| T |
14306151 |
tggaattccagttttgttgaatccatttactgtgataaacattccacaaaagaatatcaaaagtgaatatgaaacctgtatcaacaagaagaaaaaaaag |
14306052 |
T |
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| Q |
219 |
tctaagagatttgttcaatcttcaactagcacaagaataat |
259 |
Q |
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|| |||| ||||||||||| || |||||||||||||||||| |
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| T |
14306051 |
tc-aagacatttgttcaattttgaactagcacaagaataat |
14306012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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