View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16124_low_45 (Length: 255)
Name: NF16124_low_45
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_45 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 3203830 - 3204065
Alignment:
| Q |
16 |
catgtgtcgtttatagatttagcatcaagtcttgcctatgcatttcaatgcattttcttctgttttttggacaaaaattatatgccttttctaatacaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3203830 |
catgtgtcgtttatagatttagcatcaagtcttgcctatgcatttcaatgcattttcttctgttttttggacaaaaaatatatgccttttctaatacaaa |
3203929 |
T |
|
| Q |
116 |
attctttccttgtatatatataagcccaaaattaaattcattcctcttgaagcactgtttggattgttacaattgggtcagcgttatccgtatctttctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3203930 |
attctttccttgtatatatataagcccaaaattaaattcattcctcttgaagcactgtttggattgttacaattgggtcagcgttatccgtatctttctt |
3204029 |
T |
|
| Q |
216 |
gaactacaaaggtgaaaattataaagtattatctac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3204030 |
gaactacaaaggtgaaaattataaagtattagctac |
3204065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 3509021 - 3508930
Alignment:
| Q |
16 |
catgtgtcgtttatagatttagcatcaagtcttgcctatgcatttcaatgcattttcttct--gttttttggacaaaaattatatgcctttt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
3509021 |
catgtgtcatttatagatttagcatcaagtctggcctatgtatttcaatgcattttcttctccattttttggactaaaattatatgcctttt |
3508930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 3512603 - 3512510
Alignment:
| Q |
161 |
cttgaagcactgtttggattgttacaattggg-tcagcgttatccgtatctttcttgaactacaaaggtgaaaat--tataaagtattatctac |
251 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
3512603 |
cttgaagcactgttaggattgttacaattgagatcagcattatccgtatctttcttaaactacaaaggtgaaaatcatataaagtattagctac |
3512510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 3651177 - 3651258
Alignment:
| Q |
158 |
cctcttgaagcactgtttggattgttacaattggg-tcagcgttatccgtatctttcttgaactacaaaggtgaaaattata |
238 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||| | ||| | |||| ||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
3651177 |
cctcttgaagcgctgtttgaattgttaccattgagatcaccattattcgtatatttcttgaaccacaacggtgaaaattata |
3651258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University