View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_46 (Length: 253)
Name: NF16124_low_46
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 33801649 - 33801409
Alignment:
| Q |
3 |
ggaaaagatggtgtcattactttctctaatctcaacggtggtggatcaaatggtgattcctcaacaagaataccacaagattattgtgatacaccagaac |
102 |
Q |
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| T |
33801649 |
ggaaaagacggtgtcattactttctcgaatctcaacggtactggatcaaacagtgatgcttcactaagaataccaagagatccttgtggtacaccagaac |
33801550 |
T |
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| Q |
103 |
cttgtgatccctacagaatatgctcaaacaaccgtatgtgtagctgtcctcttgttcttcttcctagttgtaaaccaggtattgcctctccttgcaatga |
202 |
Q |
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| T |
33801549 |
cttgtgatccctacggaatatgctcaaacaaccgtatgtgtagctgtcctcttgttcttcttcctagttgtaaaccaggttttgcctctccttgcgatga |
33801450 |
T |
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| Q |
203 |
tgaatcaaaaagatctgttgaatttctgaaagttgatgatg |
243 |
Q |
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| T |
33801449 |
tgaatcaaaaagatctgttgaatttctgaaagttgatgatg |
33801409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 31027862 - 31028099
Alignment:
| Q |
9 |
gatggtgtcattactttctctaatctcaacggtggtggatcaaatggtgattcctcaacaagaataccacaagattattgtgatacaccagaaccttgtg |
108 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31027862 |
gatggtgtcattactttctcgaatctcaacggtggtggatcaaacggtgattcttcaacaagaataccacaagattattgtggtacaccagaaccttgtg |
31027961 |
T |
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| Q |
109 |
atccctacagaatatgctcaaacaaccgtatgtgtagctgtcctcttgttcttcttcctagttgtaaaccaggtattgcctctccttgcaatgatg---a |
205 |
Q |
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| T |
31027962 |
atccctacaatatatgcgcaaacaaacgtacgtgtagctgtcctcatgttcttcttcctagttgtaaaccaggttttgtctctccttgtgatgatgataa |
31028061 |
T |
|
| Q |
206 |
atcaaaaagatctgttgaatttctgaaagttgatgatg |
243 |
Q |
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| T |
31028062 |
atcaaaaaagtctatagaatttctgaaagctgatgatg |
31028099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 33806124 - 33805876
Alignment:
| Q |
1 |
tgggaaaagatggtgtcattactttctctaatctcaacggtggtggatcaaatggtgattcctcaacaagaataccacaagattattgtgatacaccaga |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33806124 |
tgggaaaagatggtgtcattattttctctaatctcaacggtggtggatcaaatggtgattcctcaacaagaataccacaagatcattgtgatacaccaga |
33806025 |
T |
|
| Q |
101 |
accttgtgatccctacagaatatgctcaaacaaccgtatgtgtagctgtcctcttgttct---tcttcctagttgtaaaccaggtattgcctctccttg- |
196 |
Q |
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| T |
33806024 |
accttgtgatccttacaacatttgtgcaaataaccgtaggtgtagctgtccttctgttcttcatcatcgtagttgtaaaccaggttttgtctcgccttgt |
33805925 |
T |
|
| Q |
197 |
--caatgatgaatcaaaaagatctgttgaatttctgaaagttgatgatg |
243 |
Q |
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||||| ||||| ||| ||| ||||||||||||||| |||||||| |
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| T |
33805924 |
gttgatgataaatcagaaaagtctattgaatttctgaaagctgatgatg |
33805876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 33812180 - 33812428
Alignment:
| Q |
1 |
tgggaaaagatggtgtcattactttctctaatctcaacggtggtggatcaaatggtgattcctcaacaagaataccacaagattattgtgatacaccaga |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33812180 |
tgggaaaagatggtgtcattattttctctaatctcaacggtggtggatcaaatggtgattcctcaacaagaataccacaagatcattgtgatacaccaga |
33812279 |
T |
|
| Q |
101 |
accttgtgatccctacagaatatgctcaaacaaccgtatgtgtagctgtcctcttgttct---tcttcctagttgtaaaccaggtattgcctctccttg- |
196 |
Q |
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| T |
33812280 |
accttgtgatccttacaacatttgtgcaaataaccgtaggtgtagctgtccttctgttcttcatcatcgtagttgtaaaccaggttttgtctcgccttgt |
33812379 |
T |
|
| Q |
197 |
--caatgatgaatcaaaaagatctgttgaatttctgaaagttgatgatg |
243 |
Q |
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| T |
33812380 |
gttgatgataaatcagaaaagtctattgaatttctgaaagctgatgatg |
33812428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 49462829 - 49462972
Alignment:
| Q |
9 |
gatggtgtcattactttctctaatctcaacggtggtggatcaaatggtgattcctcaacaagaataccacaagattattgtgatacaccagaaccttgtg |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| || ||||||||||| || || || |||||||||||| ||||| ||||| || || || | |
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| T |
49462829 |
gatggtgttattactttctctaatctcaacagtggtgggtcgaatggtgattcttcgactaggataccacaagatccttgtgggacaccggagccatgcg |
49462928 |
T |
|
| Q |
109 |
atccctacagaatatgctcaaacaaccgtatgtgtagctgtcct |
152 |
Q |
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|||| || || |||||| | |||||||| | ||||||||||||| |
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| T |
49462929 |
atccttatagcatatgcacgaacaaccgaaggtgtagctgtcct |
49462972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 10071124 - 10071050
Alignment:
| Q |
9 |
gatggtgtcattactttctctaatctcaacggtggtggatcaaatggtgattcctcaacaagaataccacaagat |
83 |
Q |
| |
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|||||| | ||||||||||||| ||||||| ||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
10071124 |
gatggttttattactttctctactctcaacaatggtggaataaacagtgattcatcaacaagaataccacaagat |
10071050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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