View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_47 (Length: 250)
Name: NF16124_low_47
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 11174683 - 11174499
Alignment:
| Q |
7 |
aagatatgaagagacacaaatacgacactaataattattttaaaaatatataaactttaatgtaactaattatgttgacaaagacccattttcatatgaa |
106 |
Q |
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| T |
11174683 |
aagatatgaagagacacaaatacggcaccaatgattattttaaaaatatataaactttaatctaactaattatgttgacaaagacccattttcatatgaa |
11174584 |
T |
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| Q |
107 |
atgtccaccatattacacatattggagaagtcaacaagccaccatttttacatcatagtttgttttaattaagtcatgatatctagta |
194 |
Q |
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| T |
11174583 |
atgtccaccatattacacatattggagaagtcaacaagccaccattttcacatc---gtttgttttaattaagtcatcatatctagta |
11174499 |
T |
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