View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_48 (Length: 250)
Name: NF16124_low_48
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 42667856 - 42667620
Alignment:
| Q |
3 |
tcatagggacgtgtattttttaatactagagatcttgatgttgagttaaatgtgtaccgggtactcaatttaactctatata--atctattttattacac |
100 |
Q |
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| T |
42667856 |
tcatagggacgtgtattttttaatactaaagatcttgatgttgagttaaatgtgtaccgggtactcaatttaactctatatataatctattttattacac |
42667757 |
T |
|
| Q |
101 |
cttacgaattggcttactaactactagtggtaccaacgtacaactgcacaacttgcttcaaaagaaagctatttcatgttatccatttaataaacatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42667756 |
cttacgaattggcttactaactactagtggtaccaacgtacaactgcacaacttgcttcaaaagaaagctatttcatgttatccatttaataaacatcaa |
42667657 |
T |
|
| Q |
201 |
tagtatgtgcacgttattcatatgatatgatgttagt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42667656 |
tagtatgtgcacgttattcatatgatatgatgttagt |
42667620 |
T |
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