View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16124_low_50 (Length: 245)
Name: NF16124_low_50
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23730083 - 23729861
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23730083 |
aaataaagcactgcagaattgtgcaaacaaaacagaaacgttaaatattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
23729984 |
T |
|
| Q |
101 |
aaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaatatctaagtattt |
200 |
Q |
| |
|
||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||| |||||||| |
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|
| T |
23729983 |
aaaatattgaagaatttaaaaccatgatttagagacgagatgaatacgccaatagaacaaatacgatagaattatttagtaccaaaatatcgaagtattt |
23729884 |
T |
|
| Q |
201 |
tggacagcgtgtgaaagatttga |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23729883 |
tggacagcgtgtgaaagatttga |
23729861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23732955 - 23732733
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23732955 |
aaataaagcactgcagaattgtgcaaacaaaacagaaacgctaaatattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
23732856 |
T |
|
| Q |
101 |
aaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaatatctaagtattt |
200 |
Q |
| |
|
||||| || |||||||||||| ||||||||| |||||| ||||||| ||| |||||| ||||| |||||||||||| |||||||||||||| |||||||| |
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|
| T |
23732855 |
aaaatatcaaagaatttaaaagcatgatttagagacgaaatgaatacgcctatagaacaaatacgatagaattatttagtaccaaaatatcgaagtattt |
23732756 |
T |
|
| Q |
201 |
tggacagcgtgtgaaagatttga |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23732755 |
tggacagcgtgtgaaagatttga |
23732733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23780120 - 23780308
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||| ||| |||||| |
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|
| T |
23780120 |
aaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaaccaagaacgcgacagtg |
23780219 |
T |
|
| Q |
101 |
aaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||| |||||| | |||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
23780220 |
aaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaaaata |
23780308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23867073 - 23867261
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||| ||| |||||| |
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|
| T |
23867073 |
aaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaaccaagaacgcgacagtg |
23867172 |
T |
|
| Q |
101 |
aaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||| |||||| | |||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
23867173 |
aaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaaaata |
23867261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23768871 - 23769058
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||| | ||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23768871 |
aaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaacgcaacagtt |
23768970 |
T |
|
| Q |
101 |
aaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||| |||||||| ||||||||| |||| ||| || ||||| | || |||||||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
23768971 |
aaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaata |
23769058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23818719 - 23818906
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||| | ||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23818719 |
aaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaacgcaacagtt |
23818818 |
T |
|
| Q |
101 |
aaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||| |||||||| ||||||||| |||| ||| || ||||| | || |||||||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
23818819 |
aaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaata |
23818906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 23674624 - 23674492
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtg---attatgcagaaa-tttaaaccaagagcgcaac |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| || |||||||||||| |||||||||||| |||||| |
|
|
| T |
23674624 |
aaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaattttaaaccaagaacgcaac |
23674525 |
T |
|
| Q |
97 |
agtgaaaatttcgaagaatttaaaaccatgatt |
129 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| |
|
|
| T |
23674524 |
agtgaaaatatcgaagaaattaaaaccaagatt |
23674492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 23860187 - 23860319
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtg---attatgcagaaa-tttaaaccaagagcgcaac |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| || |||||||||||| |||||||||||| |||||| |
|
|
| T |
23860187 |
aaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaattttaaaccaagaacgcaac |
23860286 |
T |
|
| Q |
97 |
agtgaaaatttcgaagaatttaaaaccatgatt |
129 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| |
|
|
| T |
23860287 |
agtgaaaatatcgaagaaattaaaaccaagatt |
23860319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 23645237 - 23645051
Alignment:
| Q |
5 |
aaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattat---gcagaaatttaaaccaagagcgcaacagtga |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||||||| | ||||||||| |
|
|
| T |
23645237 |
aaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaaaccaagaacacaacagtga |
23645139 |
T |
|
| Q |
102 |
aaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
|||| |||||||| ||||||| | |||| ||| || ||| | | || |||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
23645138 |
aaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactaccaaaata |
23645051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 23813337 - 23813523
Alignment:
| Q |
5 |
aaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgatta---tgcagaaatttaaaccaagagcgcaacagtga |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
23813337 |
aaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaaaccaagaacacaacagtga |
23813435 |
T |
|
| Q |
102 |
aaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
|||| |||||||| ||||||| | |||| ||| || ||| | | || |||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
23813436 |
aaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactaccaaaata |
23813523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 23645027 - 23644999
Alignment:
| Q |
193 |
aagtattttggacagcgtgtgaaagattt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23645027 |
aagtattttggacagcgtgtgaaagattt |
23644999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 23813547 - 23813575
Alignment:
| Q |
193 |
aagtattttggacagcgtgtgaaagattt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23813547 |
aagtattttggacagcgtgtgaaagattt |
23813575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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