View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_58 (Length: 221)
Name: NF16124_low_58
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_58 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 276214 - 276404
Alignment:
| Q |
17 |
ataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttcccta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276214 |
ataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttcccta |
276313 |
T |
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| Q |
117 |
tcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctg |
207 |
Q |
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| T |
276314 |
tcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcaaaaaaagagttgatgctctctg |
276404 |
T |
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Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 26396819 - 26397009
Alignment:
| Q |
17 |
ataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttcccta |
116 |
Q |
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| T |
26396819 |
ataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttcccta |
26396918 |
T |
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| Q |
117 |
tcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctg |
207 |
Q |
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| T |
26396919 |
tcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcaaaaaaagagttgatgctctctg |
26397009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 19217236 - 19217305
Alignment:
| Q |
115 |
tatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtc |
184 |
Q |
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| T |
19217236 |
tatcttgcaaggaaactatatatttttcattaaactcctttaatgtagttttcttacctacatatttgtc |
19217305 |
T |
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Target: scaffold0182 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 29104 - 29293
Alignment:
| Q |
17 |
ataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttcccta |
116 |
Q |
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| T |
29104 |
ataaatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttcccta |
29203 |
T |
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| Q |
117 |
tcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctct |
206 |
Q |
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| T |
29204 |
tcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcaaaaaaagagttgatgctctct |
29293 |
T |
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Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 56109216 - 56109053
Alignment:
| Q |
21 |
atcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatctt |
120 |
Q |
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| T |
56109216 |
atcatcgacatttgcttctcaaaaggtgatggagtcctaagaacaggttgcttgtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcat |
56109117 |
T |
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| Q |
121 |
gcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtc |
184 |
Q |
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| T |
56109116 |
gtaaagcaactttatatttttcgacaaattcctttaatgtagttttcttacatacatatttgtc |
56109053 |
T |
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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 26014977 - 26014820
Alignment:
| Q |
27 |
gacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaag |
126 |
Q |
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| T |
26014977 |
gacatttgcttctcaaaaggtgatggagtcctaagaacacgttgcttgtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaag |
26014878 |
T |
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| Q |
127 |
caacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtc |
184 |
Q |
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| T |
26014877 |
caactttatatttttcgacaaattcctttaatgttgttttcttacatacatatttgtc |
26014820 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 6967547 - 6967486
Alignment:
| Q |
123 |
aaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtc |
184 |
Q |
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| T |
6967547 |
aaagcaactttatatttttcgacaaattcctttaatgtagttttcttacatacatatttgtc |
6967486 |
T |
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