View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16124_low_7 (Length: 573)
Name: NF16124_low_7
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 209 - 366
Target Start/End: Complemental strand, 29864210 - 29864056
Alignment:
| Q |
209 |
agtatacgaaagttaacatctccacaaatgatgcttctctcccatattcttcaagtctcaatggaataatgtgggcgtagaacttcatcaactcgtggtt |
308 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| ||||| || |||||||||||||| |
|
|
| T |
29864210 |
agtatgcgaaagttaacatctccacaaatgataattctctcccatattcttcaagtctcaatgggatactgtggccgtaggac---atcaactcgtggtt |
29864114 |
T |
|
| Q |
309 |
aactacttccttattcataagatgcaaacgatagtcgtgttacttttatttctaaatg |
366 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
29864113 |
aactacttccttaatcataagatgcaaacgatagtcgtattactcttatttctaaatg |
29864056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 143 - 327
Target Start/End: Complemental strand, 29849633 - 29849447
Alignment:
| Q |
143 |
ctcttcaatcttttcctaatttccgtaatagtcatta--ctaatgaggaaacaaaacaagctctttttagtatacgaaagttaacatctccacaaatgat |
240 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||| | ||||||||||||| || || |||| |
|
|
| T |
29849633 |
ctcttaaatcttttcctaatttccgtaatagtgattatactatggaggaa-caaaacaagctctttttagtatgcaaaagttaacatcttcagaagtgat |
29849535 |
T |
|
| Q |
241 |
g-cttctctcccatattcttcaagtctcaatggaataatgtgggcgtagaacttcatcaactcgtggttaactacttccttattcata |
327 |
Q |
| |
|
| ||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
29849534 |
ggcttctttcccatattcttcaaatctcaatgggatactgtgggcgtagaacttcatcaacttctggtaaactacttccttaatcata |
29849447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University