View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16124_low_9 (Length: 548)
Name: NF16124_low_9
Description: NF16124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16124_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 43218879 - 43219327
Alignment:
| Q |
19 |
caaattgcaaactaattcaaagtccagatgcccaaaaaccagtaggatggatataaaccatatgcaagtgcaacatattctaaacaaaaatatcaaacat |
118 |
Q |
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| T |
43218879 |
caaattgcaaactaattcaaagtccagatgcccaaaaaccagtaggatggatataaaccatatgcaagtgcaacatattctaaacaaaaatatcaaaaat |
43218978 |
T |
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| Q |
119 |
taa---------tctgaaggaagtcaggaactaagctagcttgattttctcttcatcaatctcttcttgattctataggaataaacttgcaatagtctta |
209 |
Q |
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| T |
43218979 |
taaaagtctttatctgaaggaagtcaggaactaagctagcttgattttctcttcatcaatctcttcttgattctataggaataaacttgcaatagtctta |
43219078 |
T |
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| Q |
210 |
gttcaacaatgtgccttgtatatgtggtttgcatgtactgaaagaattattatgtatcagttgttatataatacaatttcaatttgtgtatcaatgattc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43219079 |
gttcaacaatgtgccttgtatatgtggtttgcatgtactgaaagaattattatgtatcagttgttatataatacaatttcaatttgtgtatcaatgattc |
43219178 |
T |
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| Q |
310 |
aaaaatttcaaccaaattnnnnnnngttaatctgaaagggtacaatccaagacttatatttgatacaaagtctatctcacatatttacaagagactccag |
409 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43219179 |
aaaaatttcaaccaaatt-aaaaaagttaatctgaaagggtacaatccaagacttatattttatacaaagtctatctcacatatttacaagagactccag |
43219277 |
T |
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| Q |
410 |
caataaatatgacgagtttcttgtcaacaattttaaaattcatttatcaa |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43219278 |
caataaatatgacgagtttcttgtcaacaattttaaaattcatttttcaa |
43219327 |
T |
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