View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16125_low_1 (Length: 542)
Name: NF16125_low_1
Description: NF16125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16125_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 301 - 534
Target Start/End: Original strand, 36675739 - 36675972
Alignment:
| Q |
301 |
cttaacactgagagagtaaagaacaatttcaccagtagtagtaacatttaaatgcaagattgtgagacgcatgttttgcaaaccagatacaattttcaag |
400 |
Q |
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| T |
36675739 |
cttaacactgagagagtaaagaacaatttcaccaatagtagtaacatttaaatgcaagattgtgagacgcatgttttgcaaaccagatacaattttcaag |
36675838 |
T |
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| Q |
401 |
agctgctttggcctctttcttgatcttattttaagatttgcatggttttccaccattgtcacttctatgtcagcaatgcaagattgaatctcaccaactt |
500 |
Q |
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| T |
36675839 |
agctgctttggcctctttcttgatcttattttaagatttgcatggttttccaccattgtcacttctatgtcagcaatgcaagattgaatctcaccaactt |
36675938 |
T |
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| Q |
501 |
tttcaccaatagtagctacagaattagaattatc |
534 |
Q |
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| T |
36675939 |
tttcaccaatagtagctacagaattagaattatc |
36675972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 36675498 - 36675627
Alignment:
| Q |
63 |
tttaatttataaggttaaaaaactaatgaatcttaattcaacattgcctcttgttgaatcctagtgaccatctggtatacagctgaagctatatcatcca |
162 |
Q |
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| T |
36675498 |
tttaatttataaggttaaaaaactaatgaatcttaattcaacattgcctcttgttgaatcctagtgaccgtctggtatacagctgaagctatatcatcca |
36675597 |
T |
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| Q |
163 |
ctgatcccaacttgcaatcatcttcaacct |
192 |
Q |
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| T |
36675598 |
ccgatcccaacttgcaatcatcttcaacct |
36675627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 46922649 - 46922592
Alignment:
| Q |
135 |
tggtatacagctgaagctatatcatccactgatcccaacttgcaatcatcttcaacct |
192 |
Q |
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| T |
46922649 |
tggtatatagctgcagctatctcatccactgatccaagcttgcaatcatcttcaacct |
46922592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 477
Target Start/End: Complemental strand, 46922372 - 46922272
Alignment:
| Q |
377 |
tgcaaaccagatacaattttcaagagctgctttggcctctttcttgatcttattttaagatttgcatggttttccaccattgtcacttctatgtcagcaa |
476 |
Q |
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||||||| ||| || || ||||||||||| ||||| || || ||| ||||||||| |||||||||||| |||| |||||||| ||||| || ||||||| |
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| T |
46922372 |
tgcaaactagaaaccatcttcaagagctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtaacttcaatatcagcaa |
46922273 |
T |
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| Q |
477 |
t |
477 |
Q |
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| T |
46922272 |
t |
46922272 |
T |
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