View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16125_low_3 (Length: 370)
Name: NF16125_low_3
Description: NF16125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16125_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 36507271 - 36506928
Alignment:
| Q |
18 |
gctggaaggggtgaaaacacataaaagcaaagcatatgttacagtgtgtcaacaaacctttgaaaagatttaaacgagcatctgctggaccattaccatg |
117 |
Q |
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| T |
36507271 |
gctggaaggggtgaaaacacataaaagcaaagcatatgttacagtgtgtcaacaaacctttgaaaagatttaaacgagcatctgctggaccattaccatg |
36507172 |
T |
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| Q |
118 |
ggaaaaatatttgcctgaaagaatacccattgctagaggactgtaggccaacaggctaatactgaaaaagataaatcaatcaattatccaagaatgaagc |
217 |
Q |
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| T |
36507171 |
ggaaaaatatttgcctgaaagaatacccattgctagaggactgtaggccaacaggctaatactgaaaaagataaatcaatcaattatccaagaatgaagc |
36507072 |
T |
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| Q |
218 |
tttcactgaaaacacaggaaaattattttgttcttgagtatcatattcaaatgcacttataagtcatactgaaattttcatgcactatgctttcattgtt |
317 |
Q |
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| T |
36507071 |
tttcactgaaaacacaggaaaattattttgttcttgagtatcatattcaaattcacttataagtcataatgaaattttcatgcactatgctttcattgtt |
36506972 |
T |
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| Q |
318 |
catgcatccaaagaaaacagaatttcaccactctgcagaataat |
361 |
Q |
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| T |
36506971 |
catgcatccaaagaaaacagaatttcaccactctgcagaataat |
36506928 |
T |
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