View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16125_low_5 (Length: 324)
Name: NF16125_low_5
Description: NF16125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16125_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 67 - 307
Target Start/End: Original strand, 9887182 - 9887425
Alignment:
| Q |
67 |
ttgataagttattgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgcgattcaatcc |
166 |
Q |
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| T |
9887182 |
ttgataagttattgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgtgattcaatcc |
9887281 |
T |
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| Q |
167 |
caggt---taacttcatcttctcgcaaccaccctgtcgtgaggtgcttctagagctggcgcaaaattgcaataagataccattaccaaagtctatagtag |
263 |
Q |
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| T |
9887282 |
caggtaattaacttcatcttctcgcaaccaccctgtcgtgaggtgcttctagagctggcgcaaaattgcaacaagataacattaccaaagtctatagtag |
9887381 |
T |
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| Q |
264 |
gacctggttttccacctccacataatcaggacacattaactagt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9887382 |
gacctggttttccacctccacataatcaggacacattaattagt |
9887425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9887051 - 9887120
Alignment:
| Q |
1 |
cccattgatttcaataaatttaaagattgcacaatctttgcatcccttggcatattcaagtctttgttga |
70 |
Q |
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| T |
9887051 |
cccattgatttcaacaaatttaaagattgcacaatcttttcatcccttggcatattcaagtctttgttga |
9887120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 9886988 - 9886915
Alignment:
| Q |
78 |
ttgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaag |
151 |
Q |
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| T |
9886988 |
ttgatgtgttaacagatgcccaagtgtattcagagcatgctagcaagtctgcaattgatattcatgatgttaag |
9886915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 9901621 - 9901713
Alignment:
| Q |
192 |
caccctgtcgtgaggtgcttctagagctggcgcaaaattgcaataagataccattaccaaagtctatagtaggacctggttttccacctccac |
284 |
Q |
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| T |
9901621 |
caccctgtcttgaggtacttctggaggtagcacaaaattgcaacaagataccattaccaaagtctacagcaggacttggttttccacttccac |
9901713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 50747468 - 50747597
Alignment:
| Q |
78 |
ttgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgcgattcaatcccaggttaactt |
177 |
Q |
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| T |
50747468 |
ttgatgtgttaacagatgcccaggtgtattcagagcatgctggcaagcctgcaattgatgttgatgatgttaagctggccattcaatcccaggtcaactt |
50747567 |
T |
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| Q |
178 |
catcttctcgcaaccaccctgtcgtgaggt |
207 |
Q |
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| T |
50747568 |
cagcttctctcaaccaccccctcgtgaggt |
50747597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 50748576 - 50748650
Alignment:
| Q |
204 |
aggtgcttctagagctggcgcaaaattgcaataagataccattaccaaagtctatagtaggacctggttttccac |
278 |
Q |
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|||||||||||||||| || |||||| |||| ||||||||||| || |||||||||| ||| ||||| ||||||| |
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| T |
50748576 |
aggtgcttctagagctagcacaaaatcgcaacaagataccattgccgaagtctatagcagggcctgggtttccac |
50748650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 4328604 - 4328475
Alignment:
| Q |
78 |
ttgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgcgattcaatcccaggttaactt |
177 |
Q |
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|||||||||||||||| | || || |||| |||||||||| ||||| ||||||||||| || || |||||||||| || |||||||||||||| ||||| |
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| T |
4328604 |
ttgatgtgttaacagatgcccaggtgtattcagagcatgctggcaagcctgcaattgatgttgatgatgttaagctggccattcaatcccaggtcaactt |
4328505 |
T |
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| Q |
178 |
catcttctcgcaaccaccctgtcgtgaggt |
207 |
Q |
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| T |
4328504 |
cagcttctctcaaccaccccctcgtgaggt |
4328475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 4327496 - 4327422
Alignment:
| Q |
204 |
aggtgcttctagagctggcgcaaaattgcaataagataccattaccaaagtctatagtaggacctggttttccac |
278 |
Q |
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| T |
4327496 |
aggtgcttctagagctagcacaaaatcgcaacaagataccattgccgaagtctatagcagggcctgggtttccac |
4327422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 4328682 - 4328717
Alignment:
| Q |
22 |
aaagattgcacaatctttgcatcccttggcatattc |
57 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
4328682 |
aaagactgcacaatctttgcatcccttggcatattc |
4328717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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