View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16125_low_6 (Length: 293)
Name: NF16125_low_6
Description: NF16125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16125_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 11962135 - 11962404
Alignment:
| Q |
1 |
tgtagaatcaaagtgcatagagagggaaaaacaagcactcctcaagttcaaacaaagcatcgttgacgactcttacatgctgtctacatggaaggacaat |
100 |
Q |
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| T |
11962135 |
tgtagaatcaaagtgcatagagagggaaaaacaagcactcctcaagttcaaacaaagcatcgttgacgactcttacatgctgtctacatggaaggacaat |
11962234 |
T |
|
| Q |
101 |
aacaaagatggagactgctgcaaatggaaaggaattgagtgcaagaaagaaacaggccatgtgaagaaacttgatcttcgtggtggaggtactcaattgt |
200 |
Q |
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| T |
11962235 |
aacaaagatggagactgctgcaaatggaaaggaattgagtgcaagaaagaaacaggccatgtgaagaaacttgatcttcgtggtgatgattcacaattct |
11962334 |
T |
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| Q |
201 |
tgataggtgtagttgatttcacttcattggttgtcttgaataatatggaatatttggatcttagctctaa |
270 |
Q |
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| T |
11962335 |
tggtaggtgcaattgatttcacttcgttgattgtcttgcaaaatatggaatatttggatcttagctctaa |
11962404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 11853412 - 11853146
Alignment:
| Q |
5 |
gaatcaaagtgcatagagagggaaaaacaagcactcctcaagttcaaacaaagcatcgttgacgactcttacatgctgtctacatggaaggacaataaca |
104 |
Q |
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| T |
11853412 |
gaattaaaatgcatagaaaaggagaaacaagcactcctcaagttcaaacaaagcatcattgacgactcttacatgctgtctacatggaaggatgataaca |
11853313 |
T |
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| Q |
105 |
aagatggagactgctgcaaatggaaaggaattgagtgcaagaaagaaacaggccatgtgaagaaacttgatcttcgtggtggaggtactcaattgttgat |
204 |
Q |
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| T |
11853312 |
aagatggagactgctgcaaatggaaaggaattgagtgcaagaaagaaacaggccatgtgaagaaacttgatcttcgtggtgatgattcgcaattcttggc |
11853213 |
T |
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| Q |
205 |
aggtgtagttgatttcacttcattggttgtcttgaataatatggaatatttggatcttagctctaat |
271 |
Q |
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| T |
11853212 |
aggttcaattgatttcacttggttgattgtcttgcaaaatatggaatatttggatcttagctataat |
11853146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 11834085 - 11833825
Alignment:
| Q |
5 |
gaatcaaagtgcatagagagggaaaaacaagcactcctcaagttcaaacaaagcatcgttgacgactcttacatgctgtctacatggaaggacaataaca |
104 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| |||||| |
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| T |
11834085 |
gaatcaaaatgcatagagagggagaaacaagcactcctcaagttcaaacaaagcttccttgacgactcttacatgctgtctacctggaaggatgataaca |
11833986 |
T |
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| Q |
105 |
aagatggagactgctgcaaatggaaaggaattgagtgcaagaaagaaacaggccatgtgaagaaacttgatcttcgtggtggaggtactcaattgttgat |
204 |
Q |
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| T |
11833985 |
aagatggagactgctgcaaatggaaaggaattgagtgcaacaatgaaacaggtcatgtaaagaaacttgatcttcgtggtgatgattcacaattcttggt |
11833886 |
T |
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| Q |
205 |
aggtgtagttgatttcacttcattggttgtcttgaataatatggaatatttggatcttagc |
265 |
Q |
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| T |
11833885 |
aggttcaattgatttcacttcgttgattgtcttgcaaaatatggaatatttggatcttagc |
11833825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 11928033 - 11928145
Alignment:
| Q |
160 |
tgtgaagaaacttgatcttcgtggtggaggtactcaattgttgataggtgtagttgatttcacttcattggttgtcttgaataatatggaatatttggat |
259 |
Q |
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||||||||||||||||||| ||||||| || |||| ||| |||||| | |||||||||| || ||| |||||||| | |||||||||||||||||| |
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| T |
11928033 |
tgtgaagaaacttgatctttgtggtggtccgacacaatacttggtaggtgcaattgatttcacgtcgttgattgtcttggaaaatatggaatatttggat |
11928132 |
T |
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| Q |
260 |
cttagctctaatg |
272 |
Q |
| |
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||||||||||||| |
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| T |
11928133 |
cttagctctaatg |
11928145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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