View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16125_low_8 (Length: 210)
Name: NF16125_low_8
Description: NF16125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16125_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 9886791 - 9886945
Alignment:
| Q |
1 |
gaagaagaggagccaccattggtggatgctaaacccattgaccaaccggttaggaattccggaagaggaaaaaacaaaataaatcattttcattcatttg |
100 |
Q |
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| T |
9886791 |
gaagaagaggagccaccattggtggatgctaaacccattgacgaaccggttagaaattccggaagaggaaaaaacagaataaatcattttcattcctttc |
9886890 |
T |
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| Q |
101 |
aattcgatggaaatcaattgcagacttaacatcaggaatatcaattgcagacttg |
155 |
Q |
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| T |
9886891 |
aattcgatggaaatcaattgcagacttaacatcatgaatatcaattgcagacttg |
9886945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 9866663 - 9866551
Alignment:
| Q |
1 |
gaagaagaggagccaccattggtggatgctaaacccattgaccaaccggttaggaattccggaagaggaaaaaacaaaataaatcattttcattcatttg |
100 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |
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| T |
9866663 |
gaagaagaggagccgccattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggataaaacagaataaatcattttcattcctttg |
9866564 |
T |
|
| Q |
101 |
aattcgatggaaa |
113 |
Q |
| |
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||||| ||||||| |
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| T |
9866563 |
aattcaatggaaa |
9866551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 9873768 - 9873878
Alignment:
| Q |
2 |
aagaagaggagccaccattggtggatgctaaacccattgaccaaccggttaggaattccggaagaggaaaaaacaaaataaatcattttcattcatttga |
101 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||| |
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| T |
9873768 |
aagaagaggagccgccattggaggatgctaaacccattgacgaaccggttaggaattccgaaagaggaaaaaa-aaataaaatcattttcattcctttga |
9873866 |
T |
|
| Q |
102 |
attcgatggaaa |
113 |
Q |
| |
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|||||||||||| |
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| T |
9873867 |
attcgatggaaa |
9873878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 9873296 - 9873185
Alignment:
| Q |
1 |
gaagaagaggagccaccattggtggatgctaaacccattgaccaaccggttaggaattccggaagaggaaaaaacaaaataaatcattttcattcatttg |
100 |
Q |
| |
|
||||||||| ||| |||||| | ||| ||||||||||| | || | |||||| |||||||| |||||||| ||||||||||||||||||||| ||| |
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| T |
9873296 |
gaagaagagcagctgccattgaagaatgttaaacccattggcgaaacagttagggtttccggaataggaaaaa-caaaataaatcattttcattctttta |
9873198 |
T |
|
| Q |
101 |
aattcgatggaaa |
113 |
Q |
| |
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|||||||| |||| |
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| T |
9873197 |
aattcgatagaaa |
9873185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 9887165 - 9887131
Alignment:
| Q |
151 |
acttgtgtataacacaaggttcatattcttccaca |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
9887165 |
acttgtgtataacacaaggttcatattcttccaca |
9887131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 40956615 - 40956727
Alignment:
| Q |
1 |
gaagaagaggagccaccattggtggatgctaaacccattgaccaaccggttaggaattccggaagaggaaaaaacaaaataaatcattttcattcatttg |
100 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||||||| | |||| |||||| |||| ||||||||||||||||||| |||||||||||||| |||| |
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| T |
40956615 |
gaagaagaggagccgcctttggaggatgctaaacccattggcaaaccagttagggtttccagaagaggaaaaaacaaaatcaatcattttcattcctttg |
40956714 |
T |
|
| Q |
101 |
aattcgatggaaa |
113 |
Q |
| |
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|||| |||||||| |
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| T |
40956715 |
aatttgatggaaa |
40956727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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