View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16126_high_2 (Length: 619)

Name: NF16126_high_2
Description: NF16126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16126_high_2
NF16126_high_2
[»] chr4 (11 HSPs)
chr4 (18-606)||(41049096-41049700)
chr4 (26-87)||(52772179-52772240)
chr4 (26-87)||(7413155-7413216)
chr4 (26-87)||(7459235-7459296)
chr4 (26-87)||(36752422-36752483)
chr4 (39-87)||(28983808-28983856)
chr4 (26-80)||(27009359-27009413)
chr4 (34-80)||(27031825-27031871)
chr4 (58-87)||(9064792-9064821)
chr4 (54-87)||(31375204-31375237)
chr4 (26-74)||(43446766-43446814)
[»] chr1 (7 HSPs)
chr1 (24-87)||(50145136-50145199)
chr1 (22-87)||(2208901-2208964)
chr1 (34-87)||(23809888-23809941)
chr1 (21-87)||(15331066-15331132)
chr1 (26-87)||(42630989-42631050)
chr1 (26-87)||(47429596-47429657)
chr1 (39-87)||(23913684-23913732)
[»] chr3 (5 HSPs)
chr3 (18-87)||(55068982-55069051)
chr3 (26-87)||(28731910-28731971)
chr3 (58-87)||(47570378-47570407)
chr3 (33-87)||(49407629-49407685)
chr3 (26-87)||(51053681-51053742)
[»] chr2 (5 HSPs)
chr2 (18-87)||(8293559-8293628)
chr2 (26-80)||(29740969-29741023)
chr2 (30-80)||(33548345-33548395)
chr2 (26-87)||(8859291-8859352)
chr2 (58-87)||(13623048-13623077)
[»] chr8 (4 HSPs)
chr8 (39-87)||(13634922-13634970)
chr8 (39-87)||(13735335-13735383)
chr8 (18-87)||(43129151-43129220)
chr8 (58-87)||(43642306-43642335)
[»] chr7 (5 HSPs)
chr7 (39-87)||(38261077-38261125)
chr7 (26-87)||(2228084-2228145)
chr7 (38-87)||(25648160-25648209)
chr7 (39-87)||(11074946-11074994)
chr7 (39-87)||(45594876-45594924)
[»] chr6 (4 HSPs)
chr6 (26-87)||(2395561-2395622)
chr6 (26-87)||(8374205-8374266)
chr6 (54-87)||(24571621-24571654)
chr6 (19-87)||(8487557-8487625)
[»] chr5 (6 HSPs)
chr5 (58-87)||(5203648-5203677)
chr5 (42-87)||(7670445-7670490)
chr5 (39-80)||(19867292-19867333)
chr5 (39-87)||(24051479-24051527)
chr5 (39-87)||(26310752-26310800)
chr5 (26-87)||(27003967-27004030)


Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 606
Target Start/End: Original strand, 41049096 - 41049700
Alignment:
Q  18 gatcgagattcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctatnnnnnnngaa---------cattctatagt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||         |||||||||||    
T  41049096 gatcgagattcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctataaaaaaagaagaaaaaaaacattctatagt 41049195  T
Q  109 gacttggtaacatctaagaatattgtnnnnnnnnncatgttagaaaagaagagattgccatcgatccaagtcaaacaacatttttgtaagagggtcaaac 208  Q
    ||||||||||||| ||||||||||||         ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  41049196 gacttggtaacatgtaagaatattgtaaaaaaaa-catgttagaaaagaagagattgcgatcgacccaagtcaaacaacatttttttaagagggtcaaac 41049294  T
Q  209 aacgttaatgtttctcatccgtaacataaaattccaacggtttgtgttaattttcatgtctatattaaccttacactccgtggatgacgagaatacctcc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41049295 aacgttaatgtttctcatccgtaacataaaattccaacggtttgtgttaattttcatgtctatattaaccttacactccgtggatgacgagaatacctcc 41049394  T
Q  309 acatgaatgacgtatgctattatagttattgttgtagacttgcccgatcaaataagtttcatgtttcaacacgaatttattagaccattaccatttcatt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41049395 acatgaatgacgtatgctattatagttattgttgtagacttgcccgatcaaataagtttcatgtttcaacacgaatttattagaccattaccatttcatt 41049494  T
Q  409 tcaacgttctacaaacataaagaccatcttatc--------taattttagtttattcaattaagtcnnnnnnnntcactgtgcctcttgaacaacgtcat 500  Q
    |||||||||||||||||||||||||||||||||        | |||||||||||||||||||||||        |||||||||||||| |||||||||||    
T  41049495 tcaacgttctacaaacataaagaccatcttatcttagtattttattttagtttattcaattaagtcaaaaaaaatcactgtgcctcttaaacaacgtcat 41049594  T
Q  501 tggttacgcccggctttaattttctaatgataataaaacgccaataccatatgtccatattgccatttacataagatggcattattcttcaaaatcatct 600  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41049595 tggttacgcctggctttaattttctaatgataataaaacgccaataccatatgtccatattgccatttacataagatggcattattcttcaaaatcacct 41049694  T
Q  601 taccct 606  Q
    ||||||    
T  41049695 taccct 41049700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 52772179 - 52772240
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||||| |||||||||| | | |||||||||||| |||||||||||||| ||||||    
T  52772179 ttcgaatcccgataccttcacttgtgtgtgtaagtttatattgactttgtcatttcgtctat 52772240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 7413155 - 7413216
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||||  |||| ||||||| | ||| ||||||||||||||||||||||| ||||||    
T  7413155 ttcgaatcccggtacctccacttatatgtgtgagtttataatgactttgtcatttcgtctat 7413216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 7459235 - 7459296
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||||  |||| ||||||| | ||| ||||||||||||||||||||||| ||||||    
T  7459235 ttcgaatcccggtacctccacttatatgtgtgagtttataatgactttgtcatttcgtctat 7459296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 36752422 - 36752483
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||| ||||| |||| ||||||| ||||| ||||||||||| ||||||||||| ||||||    
T  36752422 ttcgaaccccgatacctccacttatatatgtgagtttataatggctttgtcatttcgtctat 36752483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 28983808 - 28983856
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||| ||||||| | ||| ||||||||||||||||||||||||||||||    
T  28983808 acctccacttatgtgtgtgagtttataatgactttgtcattttgtctat 28983856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 27009413 - 27009359
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattt 80  Q
    |||||| ||||| | || ||||||| ||||| |||||||||||||||||||||||    
T  27009413 ttcgaaccccgatatctccacttatgtatgtgagtttataatgactttgtcattt 27009359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 27031871 - 27031825
Alignment:
Q  34 ccgacaccttcacttatctatgtaagtttataatgactttgtcattt 80  Q
    |||||||||||||||   | |||||||||||||||||||||||||||    
T  27031871 ccgacaccttcacttgggtgtgtaagtttataatgactttgtcattt 27031825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 87
Target Start/End: Complemental strand, 9064821 - 9064792
Alignment:
Q  58 agtttataatgactttgtcattttgtctat 87  Q
    ||||||||||||||||||||||||||||||    
T  9064821 agtttataatgactttgtcattttgtctat 9064792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 31375204 - 31375237
Alignment:
Q  54 tgtaagtttataatgactttgtcattttgtctat 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  31375204 tgtaagtttataatgactttgtcatttcgtctat 31375237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 43446766 - 43446814
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttg 74  Q
    |||||||||||| |||| ||||||| ||||  |||||||||||||||||    
T  43446766 ttcgaatcccgatacctccacttatatatgcgagtttataatgactttg 43446814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 50145199 - 50145136
Alignment:
Q  24 gattcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||| ||||| |||||||||| | | ||| ||||||||||||||||||||||| ||||||    
T  50145199 gattcgaaccccgataccttcacttgtgtgtgtgagtttataatgactttgtcatttcgtctat 50145136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 2208964 - 2208901
Alignment:
Q  22 gagattcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||||||||| |||| ||||| |  |||| ||||||||||||||||||||||| ||||||    
T  2208964 gagattcgaatcccgatacctccacttgt--atgtgagtttataatgactttgtcatttcgtctat 2208901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 23809941 - 23809888
Alignment:
Q  34 ccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||| |||| ||||||| | ||| ||||||||||||||||||||||||||||||    
T  23809941 ccgatacctccacttatgtgtgtgagtttataatgactttgtcattttgtctat 23809888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 15331132 - 15331066
Alignment:
Q  21 cgagattcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||| |||||| ||||  |||| ||||| | ||||| ||||||||||||||||||||||| ||||||    
T  15331132 cgaggttcgaaccccggtacctccacttgtgtatgtgagtttataatgactttgtcatttcgtctat 15331066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 42631050 - 42630989
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||| ||||| |||| ||||| | | ||| ||||||||||||||||||||||| ||||||    
T  42631050 ttcgaaccccgatacctccacttgtgtgtgtgagtttataatgactttgtcatttcgtctat 42630989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 47429657 - 47429596
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||||  |||| ||||||| | ||| ||||||||||| ||||||||||| ||||||    
T  47429657 ttcgaatcccggtacctccacttatgtgtgtgagtttataatggctttgtcatttcgtctat 47429596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 23913684 - 23913732
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||| ||||||| | ||| |||||||||| |||||||||||||||||||    
T  23913684 acctccacttatgtgtgtgagtttataataactttgtcattttgtctat 23913732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 55068982 - 55069051
Alignment:
Q  18 gatcgagattcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    ||||| |||||||| ||||| |||| ||||||| | ||||||||||||| ||||||| ||||| ||||||    
T  55068982 gatcgggattcgaaccccgatacctccacttatatgtgtaagtttataaagactttgccatttcgtctat 55069051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 28731910 - 28731971
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||||  |||||||||| | | ||| |||||| |||||||||||||||| ||||||    
T  28731910 ttcgaatcccggtaccttcacttgtgtgtgtgagtttacaatgactttgtcatttcgtctat 28731971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 47570378 - 47570407
Alignment:
Q  58 agtttataatgactttgtcattttgtctat 87  Q
    ||||||||||||||||||||||||||||||    
T  47570378 agtttataatgactttgtcattttgtctat 47570407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 49407685 - 49407629
Alignment:
Q  33 cccgacaccttcacttatctatgt--aagtttataatgactttgtcattttgtctat 87  Q
    |||||||||| ||||||| | |||  ||||||||||||| |||||||||||||||||    
T  49407685 cccgacacctccacttatgtgtgtgaaagtttataatgattttgtcattttgtctat 49407629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 51053681 - 51053742
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||| ||||||| |||||||| | |  ||| |||||||||||||||||||||| ||||||    
T  51053681 ttcgaaccccgacaacttcacttgtgtgcgtaggtttataatgactttgtcatttcgtctat 51053742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 8293628 - 8293559
Alignment:
Q  18 gatcgagattcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    ||||||| |||||||||||| |||| ||||||| | ||| | ||||||||| ||||||||||| ||||||    
T  8293628 gatcgaggttcgaatcccgatacctccacttatgtgtgtgaatttataatggctttgtcatttcgtctat 8293559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 29741023 - 29740969
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattt 80  Q
    |||||||||||  |||||||||||| | ||| |||||| ||||||||||||||||    
T  29741023 ttcgaatcccggtaccttcacttatgtgtgtgagtttacaatgactttgtcattt 29740969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 33548345 - 33548395
Alignment:
Q  30 aatcccgacaccttcacttatctatgtaagtttataatgactttgtcattt 80  Q
    |||||||| |||||||||||| || || |||||||||||||||||| ||||    
T  33548345 aatcccgataccttcacttatgtaagtgagtttataatgactttgtaattt 33548395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 8859352 - 8859291
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||| ||||| |||| ||||| | | ||| ||||||||||||||||||||||| ||||||    
T  8859352 ttcgaaccccgatacctccacttgtgtgtgtcagtttataatgactttgtcatttcgtctat 8859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 13623048 - 13623077
Alignment:
Q  58 agtttataatgactttgtcattttgtctat 87  Q
    ||||||||||||||||||||||||||||||    
T  13623048 agtttataatgactttgtcattttgtctat 13623077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 13634922 - 13634970
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||| ||||||| | ||| ||||||||||||||||||||||||||||||    
T  13634922 acctccacttatgtgtgtgagtttataatgactttgtcattttgtctat 13634970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 13735335 - 13735383
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||| ||||||| | ||| ||||||||||||||||||||||||||||||    
T  13735335 acctccacttatgtgtgtgagtttataatgactttgtcattttgtctat 13735383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 43129151 - 43129220
Alignment:
Q  18 gatcgagattcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    ||||| |||||||| |||| ||||| ||||| | | ||||||||||||||| ||||| ||||| ||||||    
T  43129151 gatcgggattcgaaccccggcacctccacttgtgtgtgtaagtttataatggctttgccatttcgtctat 43129220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 87
Target Start/End: Complemental strand, 43642335 - 43642306
Alignment:
Q  58 agtttataatgactttgtcattttgtctat 87  Q
    ||||||||||||||||||||||||||||||    
T  43642335 agtttataatgactttgtcattttgtctat 43642306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 38261077 - 38261125
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||||| | ||| ||||||||||||||||||||||| ||||||    
T  38261077 accttcacttatgtgtgtgagtttataatgactttgtcatttcgtctat 38261125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 2228145 - 2228084
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||||  |||| ||||| | | ||| ||||||||||||||||||||||| ||||||    
T  2228145 ttcgaatcccggtacctccacttgtatgtgtgagtttataatgactttgtcatttcgtctat 2228084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 25648209 - 25648160
Alignment:
Q  38 caccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    ||||| ||||||| ||||||| ||||||||| ||||||||||| ||||||    
T  25648209 cacctccacttatgtatgtaaatttataatggctttgtcatttcgtctat 25648160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 11074994 - 11074946
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||||| ||||| ||||||||||| ||||| ||||| ||||||    
T  11074994 accttcacttatgtatgtgagtttataatggctttgccatttcgtctat 11074946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 45594876 - 45594924
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||| | | ||| ||||||||||||||||||||||| ||||||    
T  45594876 accttcacttgtgtgtgtgagtttataatgactttgtcatttcgtctat 45594924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 2395622 - 2395561
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    ||||||||| || | ||||| |||| ||||| ||||||||||| ||||||||||| ||||||    
T  2395622 ttcgaatcctgatatcttcatttatgtatgtgagtttataatggctttgtcatttcgtctat 2395561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 8374205 - 8374266
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||| || || |||| ||||||| | ||| ||||||||||| ||||||||||||||||||    
T  8374205 ttcgaaccctgatacctccacttatatgtgtgagtttataatggctttgtcattttgtctat 8374266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 24571654 - 24571621
Alignment:
Q  54 tgtaagtttataatgactttgtcattttgtctat 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  24571654 tgtaagtttataatgactttgtcatttcgtctat 24571621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 8487625 - 8487557
Alignment:
Q  19 atcgagattcgaatcccgacaccttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    ||||||||||||| ||||  |||| ||||||| | ||| |||||||||||||||||  |||| ||||||    
T  8487625 atcgagattcgaaccccggtacctccacttatgtgtgtgagtttataatgactttgctatttcgtctat 8487557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 5203648 - 5203677
Alignment:
Q  58 agtttataatgactttgtcattttgtctat 87  Q
    ||||||||||||||||||||||||||||||    
T  5203648 agtttataatgactttgtcattttgtctat 5203677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 7670445 - 7670490
Alignment:
Q  42 ttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||| |||| ||||||||||||| ||| ||||||||||||||||||    
T  7670445 ttcatttatgtatgtaagtttatgatggctttgtcattttgtctat 7670490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 19867333 - 19867292
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattt 80  Q
    |||||||||||| | ||| |||||||||||||||||||||||    
T  19867333 accttcacttatgtgtgtgagtttataatgactttgtcattt 19867292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 24051479 - 24051527
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||| ||||| | ||||| ||||||||||||||||||||||| ||||||    
T  24051479 acctccacttgtgtatgtgagtttataatgactttgtcatttcgtctat 24051527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 26310800 - 26310752
Alignment:
Q  39 accttcacttatctatgtaagtttataatgactttgtcattttgtctat 87  Q
    |||||||||| | | ||| ||||||||||||||||||||||| ||||||    
T  26310800 accttcacttgtgtgtgtgagtttataatgactttgtcatttcgtctat 26310752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 27004030 - 27003967
Alignment:
Q  26 ttcgaatcccgacaccttcacttatctatgta--agtttataatgactttgtcattttgtctat 87  Q
    ||||||||||| ||||| ||||||| | |||   ||||||||||||||||||||||| ||||||    
T  27004030 ttcgaatcccggcacctccacttatgtgtgtgtgagtttataatgactttgtcatttcgtctat 27003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University