View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16126_high_7 (Length: 243)

Name: NF16126_high_7
Description: NF16126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16126_high_7
NF16126_high_7
[»] chr2 (16 HSPs)
chr2 (3-171)||(32856253-32856425)
chr2 (1-70)||(26767877-26767946)
chr2 (1-71)||(45554561-45554631)
chr2 (179-220)||(32856622-32856663)
chr2 (1-69)||(11539419-11539487)
chr2 (1-70)||(12989186-12989255)
chr2 (1-61)||(14715743-14715803)
chr2 (1-64)||(6980236-6980299)
chr2 (2-56)||(30718443-30718497)
chr2 (1-70)||(18511325-18511394)
chr2 (1-70)||(42183008-42183077)
chr2 (13-68)||(2476533-2476586)
chr2 (1-69)||(19639089-19639157)
chr2 (1-69)||(19837682-19837750)
chr2 (1-65)||(28898034-28898098)
chr2 (32-68)||(44274383-44274419)
[»] chr3 (9 HSPs)
chr3 (1-70)||(28529248-28529317)
chr3 (1-71)||(37776819-37776889)
chr3 (1-68)||(46160946-46161011)
chr3 (1-68)||(5452176-5452243)
chr3 (11-69)||(29755496-29755554)
chr3 (1-69)||(45515611-45515679)
chr3 (1-68)||(20493561-20493628)
chr3 (1-64)||(55283173-55283236)
chr3 (13-69)||(46450063-46450117)
[»] chr1 (12 HSPs)
chr1 (1-67)||(39039471-39039537)
chr1 (1-70)||(32848699-32848768)
chr1 (1-68)||(6133740-6133807)
chr1 (1-68)||(25543337-25543404)
chr1 (1-68)||(26980378-26980445)
chr1 (1-68)||(44271915-44271982)
chr1 (1-70)||(11430436-11430505)
chr1 (1-65)||(15523210-15523274)
chr1 (1-65)||(15531204-15531268)
chr1 (1-65)||(19101717-19101781)
chr1 (1-65)||(21466687-21466751)
chr1 (1-65)||(22540368-22540432)
[»] chr7 (7 HSPs)
chr7 (1-69)||(33008100-33008168)
chr7 (1-68)||(31502580-31502647)
chr7 (1-71)||(22189933-22190003)
chr7 (1-73)||(44511052-44511124)
chr7 (1-68)||(27949270-27949337)
chr7 (16-64)||(25092792-25092840)
chr7 (32-68)||(42863581-42863617)
[»] chr8 (7 HSPs)
chr8 (1-70)||(35151845-35151914)
chr8 (1-68)||(31301112-31301179)
chr8 (15-70)||(41727425-41727480)
chr8 (3-68)||(36629656-36629721)
chr8 (1-65)||(23685131-23685195)
chr8 (1-65)||(28413985-28414049)
chr8 (1-68)||(34861303-34861368)
[»] chr4 (9 HSPs)
chr4 (1-70)||(8108951-8109020)
chr4 (1-70)||(39471152-39471221)
chr4 (32-68)||(22158427-22158463)
chr4 (13-69)||(49077245-49077301)
chr4 (2-68)||(20225458-20225522)
chr4 (1-68)||(40991705-40991772)
chr4 (1-67)||(47237857-47237923)
chr4 (1-71)||(49769920-49769990)
chr4 (32-64)||(39471306-39471338)
[»] chr6 (2 HSPs)
chr6 (1-65)||(21987292-21987356)
chr6 (1-68)||(17226645-17226712)
[»] chr5 (3 HSPs)
chr5 (4-70)||(26072225-26072291)
chr5 (13-70)||(40971581-40971638)
chr5 (1-65)||(30325990-30326054)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 32856253 - 32856425
Alignment:
Q  3 atttcatccgataaaagagtcagtgc----tgaagagaatgtttaaaagtgagtgttgttagcattcctcatggaccaaaactctaatagacattaaaag 98  Q
    ||||||||||||||||||||||||||    || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  32856253 atttcatccgataaaagagtcagtgcgtactggagagagtgttcaaaagtgagtgttgttagcattcctcatggaccaaaactctaatagactttgaaag 32856352  T
Q  99 ttgcacnnnnnnngttgatacttcctccctccctctcatattaaatgtcatatttccgttgtgtgttgttatt 171  Q
    ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32856353 ttgcacaaaaaaagttgatacttcctccctccctctcatattaaatgtcatatttccgttgtgtgttgttatt 32856425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26767877 - 26767946
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    |||||||||||  ||||||||| ||||||  |||||||||| |||||||||||||| |||||||||||||    
T  26767877 tgatttcatccagtaaaagagtaagtgctagagagaatgttgaaaagtgagtgttgctagcattcctcat 26767946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 45554631 - 45554561
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcatg 71  Q
    ||||||||||| |||||||||| ||||||  ||||| |||| |||||||||||||| |||||||| |||||    
T  45554631 tgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcattcttcatg 45554561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 32856622 - 32856663
Alignment:
Q  179 taattagttgagtcgattaagatggtagaattagtatcattc 220  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  32856622 taattagttgagttgattaagatggtagaattagtatcattc 32856663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11539487 - 11539419
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctca 69  Q
    ||||||||||| |||||||||| ||||||  | ||| |||| |||| ||||||||||||||||||||||    
T  11539487 tgatttcatccaataaaagagtgagtgctagaaagagtgttcaaaaatgagtgttgttagcattcctca 11539419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12989255 - 12989186
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    ||||||||||| || ||||||| ||||   |||||| |||| |||||||||||||| |||||||||||||    
T  12989255 tgatttcatccaatgaaagagtgagtgagaaagagagtgttgaaaagtgagtgttgctagcattcctcat 12989186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14715743 - 14715803
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagc 61  Q
    ||||||||||| || | ||||| ||||||| |||||||||| ||||| |||||||||||||    
T  14715743 tgatttcatccaatgatagagtgagtgctgtagagaatgttaaaaagagagtgttgttagc 14715803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6980236 - 6980299
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcatt 64  Q
    ||||||||||| |||||||||| ||||||  ||||| |||| |||||||| ||||| |||||||    
T  6980236 tgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgaatgttgctagcatt 6980299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 30718443 - 30718497
Alignment:
Q  2 gatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttg 56  Q
    |||||||||| |||||||||| ||| ||  ||||||||||||||| |||||||||    
T  30718443 gatttcatccaataaaagagtgagtactagagagaatgtttaaaattgagtgttg 30718497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 18511325 - 18511394
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    |||||| |||| |||||||||| |||| |   |||| |||| |||||||||||||| |||||||||||||    
T  18511325 tgattttatccaataaaagagtgagtgatagtgagagtgttaaaaagtgagtgttgctagcattcctcat 18511394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 42183008 - 42183077
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    |||||||| || |||||||||| ||||| | ||||| |||| ||||| |||||||  |||||||||||||    
T  42183008 tgatttcacccaataaaagagttagtgccggagagagtgttcaaaagagagtgttactagcattcctcat 42183077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 2476586 - 2476533
Alignment:
Q  13 ataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    |||||||||| ||||||  |||||||||| |||||||||||||  |||||||||||    
T  2476586 ataaaagagtaagtgct--agagaatgttgaaaagtgagtgttagtagcattcctc 2476533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19639157 - 19639089
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctca 69  Q
    ||||||||||  |||||| ||| | ||||| ||||| |||| ||||||||| | |||||||||||||||    
T  19639157 tgatttcatctaataaaatagtgaatgctggagagagtgttaaaaagtgagcgctgttagcattcctca 19639089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19837750 - 19837682
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctca 69  Q
    ||||||||||  |||||| ||| | ||||| ||||| |||| ||||||||| | |||||||||||||||    
T  19837750 tgatttcatctaataaaatagtgaatgctggagagagtgttaaaaagtgagcgctgttagcattcctca 19837682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28898098 - 28898034
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||| |||||||||| |||||| |||||| |  | ||||| |||||||| ||||||||    
T  28898098 tgatttcatccaataaaagagtgagtgctaaagagagtactcaaaagagagtgttgctagcattc 28898034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 44274383 - 44274419
Alignment:
Q  32 agagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  44274383 agagaatatttaaaagagagtgttgttagcattcctc 44274419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 28529317 - 28529248
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    ||||||||||| |||||||||| ||||||  ||||| |||| |||||||||||||| |||||||||||||    
T  28529317 tgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcattcctcat 28529248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 37776819 - 37776889
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcatg 71  Q
    ||||||||||  |||||||||| ||||||| ||| | |||| |||||||||||||| ||||||||||||||    
T  37776819 tgatttcatctaataaaagagtgagtgctggagaaagtgttgaaaagtgagtgttgctagcattcctcatg 37776889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 46161011 - 46160946
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| |||||||||| ||||||  ||||| |||| |||||||||||||| |||||||||||    
T  46161011 tgatttcatccaataaaagagtgagtgct--agagagtgttcaaaagtgagtgttgctagcattcctc 46160946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5452176 - 5452243
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| |||||||||| | || | |||||| |||| |||||||||||||| |||||||||||    
T  5452176 tgatttcatccaataaaagagtgaatgttaaagagagtgttgaaaagtgagtgttgctagcattcctc 5452243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 29755554 - 29755496
Alignment:
Q  11 cgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctca 69  Q
    ||||||||||||  ||| | ||||||||||| |||||||||||||| ||||||||||||    
T  29755554 cgataaaagagtgggtgttaaagagaatgttgaaaagtgagtgttgctagcattcctca 29755496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 45515611 - 45515679
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctca 69  Q
    ||||||||||| |||||| ||| |||| || ||||| |||| ||||||||| ||||||| |||||||||    
T  45515611 tgatttcatccaataaaatagtgagtgttggagagagtgttaaaaagtgagcgttgttaacattcctca 45515679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 20493561 - 20493628
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| ||||| |||| |||| |  ||||| |||| |||||||||||||| |||||||||||    
T  20493561 tgatttcatccaataaatgagtgagtgttagagagagtgttgaaaagtgagtgttgctagcattcctc 20493628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 55283173 - 55283236
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcatt 64  Q
    |||||| |||| |||| ||| | |||| | |||||| |||||||||||||||||||||||||||    
T  55283173 tgattttatccaataatagaataagtgttaaagagagtgtttaaaagtgagtgttgttagcatt 55283236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 46450117 - 46450063
Alignment:
Q  13 ataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctca 69  Q
    |||||||||| ||||||  ||||| |||| |||||||||||||| ||||||||||||    
T  46450117 ataaaagagtgagtgct--agagagtgttcaaaagtgagtgttgctagcattcctca 46450063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 39039471 - 39039537
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcct 67  Q
    ||||||||||| |||||||||| |||||| || ||| |||| |||||||||||||| ||||||||||    
T  39039471 tgatttcatccaataaaagagtgagtgctaaaaagagtgttgaaaagtgagtgttgctagcattcct 39039537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32848699 - 32848768
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    |||||||| || |||||||||| ||||||  ||||| |||| ||||| ||||||||||||||||||||||    
T  32848699 tgatttcacccaataaaagagtgagtgctagagagagtgttcaaaagagagtgttgttagcattcctcat 32848768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6133740 - 6133807
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| ||||||| || ||||||  ||||| |||| |||||||||||||| |||||||||||    
T  6133740 tgatttcatccaataaaagggtgagtgctagagagattgttgaaaagtgagtgttgctagcattcctc 6133807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 25543404 - 25543337
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||  |||||||||| |||| |  ||||| ||||||||||||||||||| |||||||||||    
T  25543404 tgatttcatcaaataaaagagtaagtgttagagagagtgtttaaaagtgagtgttgctagcattcctc 25543337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26980378 - 26980445
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| |||| ||||| |||  |  ||||| |||| ||||||||||||||||||||||||||    
T  26980378 tgatttcatccaataatagagtgagtattagagagagtgttgaaaagtgagtgttgttagcattcctc 26980445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 44271982 - 44271915
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||| | |||||| ||| |||||| |||||| ||||||||||||  ||||| |||||||||||    
T  44271982 tgatttcattcaataaaatagtaagtgctaaagagagtgtttaaaagtggatgttgctagcattcctc 44271915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11430505 - 11430436
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    |||||||| || |||||||||| ||||||  | ||| || | ||||| ||||||||||||||||||||||    
T  11430505 tgatttcacccaataaaagagtgagtgctagaaagagtgctcaaaagagagtgttgttagcattcctcat 11430436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15523274 - 15523210
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||| |||||| ||| |||||| |||||| |||  |||||||| ||||| ||||||||    
T  15523274 tgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgatagcattc 15523210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15531268 - 15531204
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||| |||||| ||| |||||| |||||| |||  |||||||| ||||| ||||||||    
T  15531268 tgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgatagcattc 15531204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19101717 - 19101781
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||| |||||| ||| |||||| |||||| |||  |||||||| ||||| ||||||||    
T  19101717 tgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgctagcattc 19101781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21466687 - 21466751
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||| |||||| ||| |||||| |||||| |||  |||||||| ||||| ||||||||    
T  21466687 tgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgctagcattc 21466751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22540432 - 22540368
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||| |||||| ||| |||||| |||||| |||  |||||||| ||||| ||||||||    
T  22540432 tgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgctagcattc 22540368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33008168 - 33008100
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctca 69  Q
    ||||||||||| |||||||||| ||||||  ||| | |||| |||||||||||||| ||||||||||||    
T  33008168 tgatttcatccaataaaagagtgagtgctagagatagtgttcaaaagtgagtgttgctagcattcctca 33008100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 31502580 - 31502647
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| |||||||||| |||| |  ||||| |||| |||||||||||||| |||||||||||    
T  31502580 tgatttcatccaataaaagagtgagtgttagagagactgttgaaaagtgagtgttgctagcattcctc 31502647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 22190003 - 22189933
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcatg 71  Q
    ||||||||||| |||||||||| ||||||  ||||| |||| |||| ||||||||  ||||||||||||||    
T  22190003 tgatttcatccaataaaagagtgagtgctagagagagtgttgaaaaatgagtgtttctagcattcctcatg 22189933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44511052 - 44511124
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcatgga 73  Q
    ||||||||||| |||||| ||| ||||||  ||||| |||| |||||| |||||||||||| || ||||||||    
T  44511052 tgatttcatccaataaaaaagtgagtgctagagagagtgttgaaaagtaagtgttgttagctttactcatgga 44511124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 27949337 - 27949270
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| ||| |||||| |||| |  ||||| |||| ||||||||||||||||||| ||||||    
T  27949337 tgatttcatccaatacaagagtgagtgttagagagagtgttaaaaagtgagtgttgttagctttcctc 27949270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 25092792 - 25092840
Alignment:
Q  16 aaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcatt 64  Q
    |||||||  |||| ||||||| |||| ||||||||||||||||||||||    
T  25092792 aaagagtgggtgcggaagagagtgttgaaaagtgagtgttgttagcatt 25092840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 42863581 - 42863617
Alignment:
Q  32 agagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  42863581 agagagtgtttaaaagtgagtgttgctagcattcctc 42863617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35151845 - 35151914
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    ||||||||||| |||||||||| | |||| || ||| |||| |||||||||||||| ||| |||||||||    
T  35151845 tgatttcatccaataaaagagtaaatgctaaaaagagtgttaaaaagtgagtgttgctagtattcctcat 35151914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 31301179 - 31301112
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| |||||||||| ||||| | | | | |||| ||||||||||||| ||||||||||||    
T  31301179 tgatttcatccaataaaagagtgagtgccggaaatagtgttcaaaagtgagtgttattagcattcctc 31301112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 41727480 - 41727425
Alignment:
Q  15 aaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    |||||||| | |||| |||||| |||| ||||||||||||||| ||||||||||||    
T  41727480 aaaagagtgattgctaaagagagtgttcaaaagtgagtgttgtcagcattcctcat 41727425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 36629721 - 36629656
Alignment:
Q  3 atttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||  |||||||||| |||||| |||| | |||| |||| ||||| |||||||||||||||    
T  36629721 atttcatctaataaaagagtaagtgctaaagatagtgttcaaaaatgagtattgttagcattcctc 36629656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23685195 - 23685131
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||| |||||| ||| |||||| |||||| |||  |||||||| ||||| ||||||||    
T  23685195 tgatttcatccaataaaatagtgagtgcttaagagagtgtgcaaaagtgaatgttgctagcattc 23685131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28413985 - 28414049
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||  |||||| ||| || |||  ||||| |||| |||||||||||||||||||||||    
T  28413985 tgatttcatcgaataaaaaagtgagcgctagagagagtgttgaaaagtgagtgttgttagcattc 28414049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34861303 - 34861368
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| |||||||||| ||||||  ||||| |||| ||||||||| | || |||||||||||    
T  34861303 tgatttcatccaataaaagagtgagtgct--agagagtgttgaaaagtgagaggtgctagcattcctc 34861368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8109020 - 8108951
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    |||||||| || |||||||||| ||||||  ||||| |||| |||||||||||||| ||||||| |||||    
T  8109020 tgatttcacccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcatttctcat 8108951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39471221 - 39471152
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    ||||||||||  ||||||||||  ||| | |||||| | ||||||||||||||||| |||||||||||||    
T  39471221 tgatttcatctaataaaagagttggtgttaaagagagtatttaaaagtgagtgttgctagcattcctcat 39471152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 22158427 - 22158463
Alignment:
Q  32 agagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    |||||||||| ||||||||||||||||||||||||||    
T  22158427 agagaatgttgaaaagtgagtgttgttagcattcctc 22158463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 49077301 - 49077245
Alignment:
Q  13 ataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctca 69  Q
    |||||||| | |||||| ||||||||||| |||| ||||||||| ||||||||||||    
T  49077301 ataaaagaatgagtgctaaagagaatgttgaaaactgagtgttgctagcattcctca 49077245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 20225458 - 20225522
Alignment:
Q  2 gatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    |||| ||||| |||||||||| ||||||  ||||| |||| |||||||||||||| |||||||||||    
T  20225458 gattccatccaataaaagagtgagtgct--agagagtgttcaaaagtgagtgttgctagcattcctc 20225522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 40991705 - 40991772
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| || ||||||| |||| |  ||||| |||| |||||||||||||| |||||||||||    
T  40991705 tgatttcatccaatgaaagagtgagtgatagagagagtgttgaaaagtgagtgttgctagcattcctc 40991772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 47237857 - 47237923
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcct 67  Q
    ||||||||||| |||||||||| | ||||  ||||| |||| ||||| |||||||| ||||||||||    
T  47237857 tgatttcatccaataaaagagtgaatgctagagagagtgttcaaaagagagtgttgatagcattcct 47237923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 49769920 - 49769990
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcatg 71  Q
    ||||||||||| ||||||||||  ||| | || |||||||| |||||| | ||||| ||||||||||||||    
T  49769920 tgatttcatccaataaaagagtatgtgttaaaaagaatgttcaaaagtaactgttgctagcattcctcatg 49769990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 39471306 - 39471338
Alignment:
Q  32 agagaatgtttaaaagtgagtgttgttagcatt 64  Q
    |||||||||||||||| ||||||||||||||||    
T  39471306 agagaatgtttaaaagagagtgttgttagcatt 39471338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21987356 - 21987292
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||| |||||| ||| |||||| |||||| |||  |||||||| ||||||||||||||    
T  21987356 tgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgttagcattc 21987292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17226645 - 17226712
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctc 68  Q
    ||||||||||| |||||||||| | |||| |||||| |||| | ||| |||||||||||| |||||||    
T  17226645 tgatttcatccaataaaagagtgaatgctaaagagagtgttcagaagagagtgttgttagtattcctc 17226712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 26072225 - 26072291
Alignment:
Q  4 tttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    ||||| || |||||||||| ||||||  |||||||| | ||||| |||||||| |||||||||||||    
T  26072225 tttcacccaataaaagagtgagtgctagagagaatgctcaaaagagagtgttgctagcattcctcat 26072291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 40971581 - 40971638
Alignment:
Q  13 ataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattcctcat 70  Q
    |||||||||| ||||||  ||||| || | ||||| ||||||||||||||||||||||    
T  40971581 ataaaagagtgagtgctagagagagtgctcaaaagagagtgttgttagcattcctcat 40971638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30325990 - 30326054
Alignment:
Q  1 tgatttcatccgataaaagagtcagtgctgaagagaatgtttaaaagtgagtgttgttagcattc 65  Q
    ||||||||||| |||||| ||| |||||| |||||| |||  |||||||| ||||| ||||||||    
T  30325990 tgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgctagcattc 30326054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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