View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16126_low_1 (Length: 1226)
Name: NF16126_low_1
Description: NF16126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16126_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 2018755 - 2018177
Alignment:
| Q |
1 |
tgtactcttaggccgtaaacctgaccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2018755 |
tgtactcttaggccgtaaacctgaccaataagtattgtagcataagcatgctaaaaatcatgcatgggccttgaaaatatttggtagtgattcggatgaa |
2018656 |
T |
|
| Q |
101 |
caacattcatctgaaaattaatgagaggcatttgcttattatttgtcagaaatttaacagaattaagcgaagttgtatgcttaaatgctttaatttttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| | |
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|
| T |
2018655 |
caacattcatctgaaaattaatgagagacatttgcttattatttgtcagaaatttaacagaattcagtgaagttgtatgcttaaatgctttaatttttca |
2018556 |
T |
|
| Q |
201 |
aagttgaacagaaccacgagacatgcttccnnnnnnnnc-ttcacttcttccattcttggatagaattgcatctatagaacaaacaaaagaaatcttcaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2018555 |
aagttgaacagaaccacgagacatgcttcattttttttctttcacttcttccattattggatagaattgcatctatagaacaaacaaaagaaatcttcaa |
2018456 |
T |
|
| Q |
300 |
tgaaggttgtcaagttatggattggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaaataacctcagtgatacagt |
399 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |
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|
| T |
2018455 |
tgaaggttgtcaagatatggatcggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatactatttaaataacctc--tgatacaat |
2018358 |
T |
|
| Q |
400 |
attgacactgaatcttacattttgttgacaattctttggcgttgatcaggttgcagttgggttctccaa---------tcagttgtgggttcagtaccct |
490 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
2018357 |
attgatactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaactgtgtcagtagtgggttcagtaccct |
2018258 |
T |
|
| Q |
491 |
gattagcgacccaatccttcgaatccatcaaatccatcaaatccaaaatatctgaagcaccagaaaaagaacaattcaatcaaagccaat |
580 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
2018257 |
gattagcgacccaatccttcg---------aatccatcaaatccaaagtatctgaagcaccagaaaaagaacattccaatcaaagccaat |
2018177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 626 - 1099
Target Start/End: Complemental strand, 2018104 - 2017625
Alignment:
| Q |
626 |
attatataatacgaatatgtataaatcatctaaaatcaatgttatcaatcataaatccctttacgctgcactgccatagcgccactataacccgcttttt |
725 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |
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|
| T |
2018104 |
attatataacacaaatatgtataaatcatctaaaatcaatgttatcaatcacaaatccctttacgctgcactgtcatagcgccactataacc-gcttttt |
2018006 |
T |
|
| Q |
726 |
gacaacagtgttactaaatggtggtcttggcaccaccatggcgggcatttgtgaaggaatgcccatcatcgcagtgccatagactgcaatggcgtgtttg |
825 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
2018005 |
gacaacagtgttactaaatggtggtcgtggcaccaccatggcgggcatttgggaaggaatgcccatcatcgcagtgtcataggctgcaatggcgtgtttg |
2017906 |
T |
|
| Q |
826 |
tatagatgatttttaaccatcggctatat-------tccgccttagacaacattgaatgacaacactttgtcacaaaactcacatttcatccctaaatta |
918 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017905 |
tatagaggatttttaaccatcggctatattctgccatccgccatagacaacattgattgacaacactttgtcacaaaactcacatttcatccctaaatta |
2017806 |
T |
|
| Q |
919 |
cgaaattatttgttcatcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacacannnnnnnnnccattcacattccgcga |
1018 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2017805 |
cgaaattatttcttcctcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacactttttttttttcattcacattccgcga |
2017706 |
T |
|
| Q |
1019 |
aatcaatggttgatgatgatgatctgcctcgacgagattaatatggtgcatgcatgcattttgttaagaacgcttattgtg |
1099 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017705 |
aatcaatggttgatgatgatgatctgccgcgacgcgattaatatggtgcatgcatgcattttgttaagaacgcttattgtg |
2017625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 25 - 612
Target Start/End: Complemental strand, 2021287 - 2020705
Alignment:
| Q |
25 |
ccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaacaacattcatctgaaaattaatga |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |
|
|
| T |
2021287 |
ccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaatcacattcaactgaaaattaacga |
2021188 |
T |
|
| Q |
125 |
gaggcatttgcttattatttgtcagaaatttaacagaattaagcgaagttgtatgcttaaatgctttaattttttaaagttgaacagaaccacgagacat |
224 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||| ||||| | |
|
|
| T |
2021187 |
gaggcatttgcctattatttgtcagaaattgaacagaattgagcgaagttgtatgcttaaatgattaaatttttttaagttgaacagaaccgcgagatgt |
2021088 |
T |
|
| Q |
225 |
gcttccnnnnnnnncttcacttcttccattcttggatagaattgcatctatagaacaaacaaaagaaatcttcaatgaaggttgtcaagttatggattgg |
324 |
Q |
| |
|
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| |
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|
| T |
2021087 |
gcttcatgatttt--tttacatcttccattcttggatagaattgcatctatagaacaaacaaaagaaatcttcaataaaggttctcaatttatggattga |
2020990 |
T |
|
| Q |
325 |
ttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaaataacctcagtgatacagtattgacactgaatcttacattttgt |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||| || | |
|
|
| T |
2020989 |
ttattcatttcttaattttcttttgaaatgca---acatgtaaaaatactatttaaataacctc--tgacacagtattgacaccaaatcttacatattat |
2020895 |
T |
|
| Q |
425 |
tgacaattctttggcgttgatcaggttgcagttgggttctccaatcagttg---------tgggttcagtaccctgattagcgacccaatccttcgaatc |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||| | ||||| |
|
|
| T |
2020894 |
tgacaattctttggcgttgatcaggttgcagttgagttctccaatcaattgtgtcggcaatggattcagtaccctgattagcgacccaattactggaatc |
2020795 |
T |
|
| Q |
516 |
catcaaatccatcaaatccaaaatatctgaagcaccagaaaaagaacaattcaatc-aaagccaattctg-aaagaaacatgaaagggacatatatatg |
612 |
Q |
| |
|
||| |||||| | | |||||||| ||||| ||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2020794 |
cattaaatcctt---------agtatctgaaacaccaaaaatagaacaatccaatcaaaagccaattctgaaaagaaacatgaaagggacatatatatg |
2020705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 8e-52
Query Start/End: Original strand, 302 - 477
Target Start/End: Complemental strand, 1989351 - 1989175
Alignment:
| Q |
302 |
aaggttgtcaa-gttatggattggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaaataacctcagtgatacagta |
400 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||| |||| ||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
1989351 |
aaggttgtcaaagttatggattgattattaatttcttaattttcttttcaaatgcaacaacagctaacaatgctatttaaataacctcagtgataaagta |
1989252 |
T |
|
| Q |
401 |
ttgacactgaatcttacattttgttgacaattctttggcgttgatcaggttgcagttgggttctccaatcagttgtg |
477 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||| |||||||||||| ||||| |
|
|
| T |
1989251 |
ctgacactgaatcttacattttgttgacgattctatggcgttgatcaggttgtatttgagttctccaatcacttgtg |
1989175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 395 - 610
Target Start/End: Complemental strand, 2035751 - 2035535
Alignment:
| Q |
395 |
acagtattgacactgaatcttacattttgttgacaattctttggcgttgatcaggttgcagttgggttctccaatcagttgtg---------ggttcagt |
485 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||| || |
|
|
| T |
2035751 |
acagtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaactgtgtcggcagtggcttccgt |
2035652 |
T |
|
| Q |
486 |
accctgattagcgacccaatccttcgaatccatcaaatccatcaaatccaaaatatctgaagcaccagaaaaagaacaattcaatcaaagccaattctg- |
584 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||| | || ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2035651 |
accctgattagggacccaattattggaatccatcaaatacg---------aagtatctgaagcaccagaaaaagaacaatccaatcaaagccaattctga |
2035561 |
T |
|
| Q |
585 |
aaagaaacatgaaagggacatatata |
610 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2035560 |
aaagaaacatgaaagggacatatata |
2035535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 1989592 - 1989427
Alignment:
| Q |
50 |
gctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaacaacattcatctgaaaattaatgagaggcatttgcttattatttgtcag |
149 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||| |
|
|
| T |
1989592 |
gctaaaaataatgcatggaacttgaaaatatttagtagtgattcagatgaacaacattcatctgaaaattaatga-ttgcatttgcctattatttctcaa |
1989494 |
T |
|
| Q |
150 |
aaatttaacagaa--ttaagcgaagttgtatgcttaaatgctttaattttttaaagttgaacagaac |
214 |
Q |
| |
|
||||| || |||| || |||||||||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
1989493 |
aaattgaatagaattttgagcgaagttgtatgctaaaatgatttaattttttaaagttaaacagaac |
1989427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 1094 - 1219
Target Start/End: Complemental strand, 2017324 - 2017189
Alignment:
| Q |
1094 |
attgtggccgcaatttgcggtggaattgaatccgaaaaaatgatagagaataacctggatggagagttcttggcggccgatgatcaa----------ctc |
1183 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
2017324 |
attgtgcccgcaatttgcggtggaattgaatccgaaaaaatgatagacaataacctggatggagagttcttggcgtccgatgatcaactacgtcgtgctc |
2017225 |
T |
|
| Q |
1184 |
cggcgacgtttttaggaaagttgagttctgtgctgc |
1219 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
2017224 |
cggcgacgttttcagggaagttgagttctgtgctgc |
2017189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 701 - 769
Target Start/End: Complemental strand, 2020527 - 2020460
Alignment:
| Q |
701 |
atagcgccactataacccgctttttgacaacagtgttactaaatggtggtcttggcaccaccatggcgg |
769 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2020527 |
atagtgccactataacc-gctttttgacagcagtgttactaaatggtggtcatggcaccaccatggcgg |
2020460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 772 - 860
Target Start/End: Complemental strand, 2020434 - 2020346
Alignment:
| Q |
772 |
atttgtgaaggaatgcccatcatcgcagtgccatagactgcaatggcgtgtttgtatagatgatttttaaccatcggctatattccgcc |
860 |
Q |
| |
|
||||||||||||||||| || || | ||||||||| |||||||||| ||||| ||||| |||||||||||||| |||||| |||||| |
|
|
| T |
2020434 |
atttgtgaaggaatgcctgtcgtcacggtgccataggctgcaatggcttgtttatatagcggatttttaaccatcagctatactccgcc |
2020346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 935 - 981
Target Start/End: Complemental strand, 2020161 - 2020115
Alignment:
| Q |
935 |
tcaaatattaacattttgtatctcaaaatataacaaaaacattctca |
981 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
2020161 |
tcaaatattaacattttttaccccaaaatataacaaaaacattctca |
2020115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 44969352 - 44969406
Alignment:
| Q |
387 |
tcagtgatacagtattgacactgaatcttacattttgttgacaattctttggcgt |
441 |
Q |
| |
|
|||||||||||||| | | ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
44969352 |
tcagtgatacagtactaaaactagagcttacattttgttgacaattctttggcgt |
44969406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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