View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16126_low_11 (Length: 212)
Name: NF16126_low_11
Description: NF16126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16126_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 36756175 - 36756373
Alignment:
| Q |
1 |
agattttgttggagagatttctgagttnnnnnnnttggtgattagtcttaaagatgaacgagataaattaaagaaaactttgaacgaattaagcgtagaa |
100 |
Q |
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| T |
36756175 |
agattttgttggagagattgttgagttaaaaaaattggcgattagtcttaaagatgaatgggataaattaaagaaaactttgaacgaattaagcgtagaa |
36756274 |
T |
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| Q |
101 |
aattgcaagagtaatgtcaaattactgatcaaataagataatcactgggttacaattgacaggttgaaagctgaaattgaagaattgaaagatcaaatt |
199 |
Q |
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| T |
36756275 |
aattgcaagagtaatgtcaaattactgatcaaataagataatcaccgggttacaattgacaggttgaaagctaaaattgaagaattgaaagatcaaatt |
36756373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 36755822 - 36755938
Alignment:
| Q |
35 |
ttggtgattagtcttaaagatgaacgagataaattaaagaaaactttgaacgaattaagcgtagaaaattgcaagagtaatgtcaaattactgatcaaat |
134 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
36755822 |
ttggtgattagtcttaaagatgaacgggataaattaaagaaaactttggacgaattaagcgtagaaaattccaagagtaatgtcaaattactgatcgaag |
36755921 |
T |
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| Q |
135 |
aagataatcactgggtt |
151 |
Q |
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| T |
36755922 |
aagataatcactgggtt |
36755938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 36748843 - 36749045
Alignment:
| Q |
4 |
ttttgttggagagatttctgagttnnnnnnnttggtgattagtcttaaagatgaacgagataaattaaagaaaactttgaacgaattaagcgta------ |
97 |
Q |
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| T |
36748843 |
ttttgttgaagagattgctgagttaaaaaaattggtgattagtcttaaagatgaatgggataaattaaagaaaactttggacgaattaaacgtattaaac |
36748942 |
T |
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| Q |
98 |
---gaaaattgcaagagtaatgtcaaattactgatcaaataagataatcactgggttacaattgacaggttgaaagctgaaattgaagaattgaaagatc |
194 |
Q |
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|||| || |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||| ||| ||| |
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| T |
36748943 |
gtagaaagttccaagagtaatgtcaaattacagatcaaagaagataatcactgggttacggttgacaggttaaatgctgaaattgaagaattaaaatatc |
36749042 |
T |
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| Q |
195 |
aaa |
197 |
Q |
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||| |
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| T |
36749043 |
aaa |
36749045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 36767309 - 36767406
Alignment:
| Q |
4 |
ttttgttggagagatttctgagttnnnnnnnttggtgattagtcttaaagatgaacgagataaattaaagaaaactttgaacgaattaagcgtagaaa |
101 |
Q |
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|||||||| ||||||| ||||||| ||| |||| ||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||| |||| |
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| T |
36767309 |
ttttgttgaagagattgctgagttgaaaaatttgatgatcagtcttaaagatgaacgggataatttaaagaaatctttggacgaattaagcgtggaaa |
36767406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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