View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16126_low_3 (Length: 421)
Name: NF16126_low_3
Description: NF16126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16126_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 24750194 - 24750581
Alignment:
| Q |
19 |
gtattactattaaacaagtaccttttaagcaactatggtttcaagtacccaatattcttaacactatgtcacatgatggcatgttcaatgttaagttaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24750194 |
gtattactattaaacaagtaccttttaagcaactatggtttcaagtacccaatattcttaacactatgtcacatgatggcatgttcaatgttaagttaca |
24750293 |
T |
|
| Q |
119 |
ttgcaatatcatggatgaaggtggtgccattgcaaacagtgagatcaagggtacaatttgtgaagatatcatcacttggacttatattttgtttgtctgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24750294 |
ttgcaatatcatggatgaaggtggtgccattgcaaacagtgagatcaagggtacaatttgtgaagatatcatcacttggacttatattttgtttgtctgt |
24750393 |
T |
|
| Q |
219 |
ggttggagggaatatttctctaagatatcttcctgtgtcttttaatcaagctattggtgctacgactccnnnnnnnacggcggtttttgcttatcttatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
24750394 |
ggttggagggaatatttctctaagatatcttcctgtgtcttttaatcaagctattggtgctacgacaccgttttttacggcggtttttgcttatcttatg |
24750493 |
T |
|
| Q |
319 |
acccttaagagggagggttggcttacttatatggctcttgtacctgttgttactggtgttatgattgctagtggggtatgtcctcttt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24750494 |
acccttaagagggagggttggcttacttatatggctcttgtacctgttgttactggtgttatgattgctagtggggtatgtcctcttt |
24750581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 399
Target Start/End: Original strand, 31330464 - 31330637
Alignment:
| Q |
226 |
gggaatatttctctaagatatcttcctgtgtcttttaatcaagctattggtgctacgactccnnnnnnnacggcggtttttgcttatcttatgaccctta |
325 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||||| |||||||| || || || || || || ||||||||||| |||||||| ||| |
|
|
| T |
31330464 |
gggaatatttcgcttcgatatcttcctgtgtcgtttaatcaggctattggcgcgactacgcctttctttactgccatttttgcttatattatgaccttta |
31330563 |
T |
|
| Q |
326 |
agagggagggttggcttacttatatggctcttgtacctgttgttactggtgttatgattgctagtggggtatgt |
399 |
Q |
| |
|
||||||||| ||| || |||||| | | ||||| |||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
31330564 |
agagggaggcttgtctcacttatcttacccttgttcctgttgttactggtgttgttattgctagtggggtatgt |
31330637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 396
Target Start/End: Original strand, 35016286 - 35016438
Alignment:
| Q |
244 |
tatcttcctgtgtcttttaatcaagctattggtgctacgactccnnnnnnnacggcggtttttgcttatcttatgacccttaagagggagggttggctta |
343 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| || || || ||||||||||||||| |||||| || || || |||| |||||||| |
|
|
| T |
35016286 |
tatcttcctgtgtcgtttaatcaagctatcggtgctactacgccgttttttactgcggtttttgcttatgctatgacgctcaaaagagaggcttggctta |
35016385 |
T |
|
| Q |
344 |
cttatatggctcttgtacctgttgttactggtgttatgattgctagtggggta |
396 |
Q |
| |
|
||||| | |||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35016386 |
cttatcttgctcttgttcctgttgttactggtgttatcattgctagtggggta |
35016438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University