View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16126_low_5 (Length: 268)
Name: NF16126_low_5
Description: NF16126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16126_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 6241793 - 6241553
Alignment:
| Q |
23 |
gtaattacaacagcatcttctgtcttcacagacaagttttcgaaattgacatctttgagtttgctaact----ttggattaatctgtaaaggaaaatgca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
6241793 |
gtaattacaacagcatcttctgtcttcacagacaagttttcgaaattgacatctttgagtttgc-aactttggttggattaatctgtaaaggaaaatgca |
6241695 |
T |
|
| Q |
119 |
atttccctgcttcaattgtcaaatgaaagctcatttggttcaatacatctttcttttcatgaattcctgtaattttcagatttatagtttgatatgggaa |
218 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
6241694 |
atttccctgctttagttgtcaaatgatagctcatttggtccaatacatctttcttttcatgaattcctgtatttttcagatttatagtttcatatgggaa |
6241595 |
T |
|
| Q |
219 |
aaatggaaatcaataatgtgaacccccttttcacattccatt |
260 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
6241594 |
aaatggagatcaataatgtgaaccaccttttcacatttcatt |
6241553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 13283188 - 13283426
Alignment:
| Q |
14 |
agaacagatgtaattacaacagcatcttctgtcttcacagacaagttttcgaaattgacatctttgagtttgctaactttggattaatctgtaaaggaaa |
113 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13283188 |
agaacagaagtaattacagcagcatcttctgtcttcacaaacgagttttcgaaattgacatctttgagtttgctaactttggattaatctgcaaaggaaa |
13283287 |
T |
|
| Q |
114 |
atgcaatttccctgcttcaattgtcaaatgaaagctcatttggttcaatacatctttcttttcatgaattcctgtaattttcagatttatagtttgatat |
213 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
13283288 |
atgcaagttccctgcttcagttgtcaaatgatagcttatttggtgcaatacatctttcttttcatgaattcctgtaattttcagatttattgtttcatat |
13283387 |
T |
|
| Q |
214 |
gggaaaaatggaaatcaataatgtgaacccccttttcac |
252 |
Q |
| |
|
| |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
13283388 |
gagaaaaatggagatcaataatgtgaaccaccttttcac |
13283426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 6138910 - 6138670
Alignment:
| Q |
14 |
agaacagatgtaattacaacagcatcttctgtcttcacagacaagttttcgaaattgacatctttgagtttgctaactttggattaatctgtaaaggaaa |
113 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
6138910 |
agaacagaagtaattacagcagcatcttctgtcttcacatacgagttttcgaaattgacatctttgagtttgctaacttaggattaatctgcaaaggaaa |
6138811 |
T |
|
| Q |
114 |
atgcaatttccctgcttcaattgtcaaatgaaagctcatttggttca--atacatctttcttttcatgaattcctgtaattttcagatttatagtttgat |
211 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||| |||| ||||||| || |||||||||| |||||||||||||||||||||||||||||| | |||| || |
|
|
| T |
6138810 |
atgcaagttccctgcctcagttgtcaaatgatagcttatttggtgcaatatacatctttattttcatgaattcctgtaattttcagattttttgtttcat |
6138711 |
T |
|
| Q |
212 |
atgggaaaaatggaaatcaataatgtgaacccccttttcac |
252 |
Q |
| |
|
||| |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
6138710 |
atgagaaaaatggagatcaataatgtgaaccaccttttcac |
6138670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 6234016 - 6233832
Alignment:
| Q |
14 |
agaacagatgtaattacaacagcatcttctgtcttcacagacaagttttcgaaattgacatctttgagtttgctaact----ttggattaatctgtaaag |
109 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
6234016 |
agaacagaagtaattacaacagcatattctgtttccacagacaagttttcgaaattgacatctttgagtttgc-aacttcggttggattaatctgtaaag |
6233918 |
T |
|
| Q |
110 |
gaaaatgcaatttccctgcttcaattgtcaaatgaaagctcatttggttcaatacatctttcttttcatgaattcctgtaattttc |
195 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6233917 |
gaaaatgcaatttccctgctttagttgtcaaatgatagctcatttggtccaatacatctttcttttcatgaattcctgtaattttc |
6233832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 6859430 - 6859615
Alignment:
| Q |
14 |
agaacagatgtaattacaacagcatcttctgtcttcacagacaagttttcgaaattgacatctttgagtttgctaact-ttggattaatctgtaaaggaa |
112 |
Q |
| |
|
|||||||| | |||| ||||||||||| ||||||| |||| ||||||||| |||| |||||||| |||||||||| | ||||||| | ||||||||||| |
|
|
| T |
6859430 |
agaacagaagaaattgcaacagcatctcctgtcttgacaggcaagttttcaaaatcgacatcttcaagtttgctaattattggattgaactgtaaaggaa |
6859529 |
T |
|
| Q |
113 |
aatgcaatttccctgcttcaattgtcaaatgaaagctcatttggttcaatacatctttcttttcatgaattcctgtaattttcaga |
198 |
Q |
| |
|
||| ||| |||||||||| |||||||||||||||||||||| | |||| | ||||||||||||| ||||||||||||||||||| |
|
|
| T |
6859530 |
aatccaaaatccctgcttcggttgtcaaatgaaagctcatttgctccaatgcctctttcttttcattaattcctgtaattttcaga |
6859615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 8572886 - 8573071
Alignment:
| Q |
14 |
agaacagatgtaattacaacagcatcttctgtcttcacagacaagttttcgaaattgacatctttgagtttgctaact-ttggattaatctgtaaaggaa |
112 |
Q |
| |
|
|||||||| |||||| ||||||||||| || |||| |||| |||||||||||||| |||||||| ||||||||| | || |||| | | |||||||| |
|
|
| T |
8572886 |
agaacagaagtaattgcaacagcatctcctatcttgacaggcaagttttcgaaatcgacatcttcaggtttgctaattattcgattgaaccctaaaggaa |
8572985 |
T |
|
| Q |
113 |
aatgcaatttccctgcttcaattgtcaaatgaaagctcatttggttcaatacatctttcttttcatgaattcctgtaattttcaga |
198 |
Q |
| |
|
||| ||| | ||||||||| ||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8572986 |
aatccaaaattcctgcttcagttgtcaagtgaaagctcatttgctccaatacctctttcttttcatgaattcctgtaattttcaga |
8573071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 6255031 - 6254910
Alignment:
| Q |
14 |
agaacagatgtaattacaacagcatcttctgtcttcacagacaagttttcgaaattgacatctttgagtttgctaactttggattaatctgtaaaggaaa |
113 |
Q |
| |
|
|||||| | ||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6255031 |
agaacaaaagtaattacaaccccatattctgtcttcacagacaagtttttgaatttgacatctttgagtttgctaactttggattaatctgt-----aaa |
6254937 |
T |
|
| Q |
114 |
atgcaatttccctgcttcaattgtcaa |
140 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
6254936 |
atgcaatttccctgcttcagttgtcaa |
6254910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 6164189 - 6164126
Alignment:
| Q |
52 |
agacaagttttcgaaattgacatctttgagtttgctaactttggattaatctgtaaaggaaaat |
115 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6164189 |
agacaagttttagaaatcgacatctttgagtttgctaactttggattaaactgtaaaggaaaat |
6164126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 7746810 - 7746735
Alignment:
| Q |
124 |
cctgcttcaattgtcaaatgaaagctcatttggttcaatacatctttcttttcatgaattcctgtaattttcagat |
199 |
Q |
| |
|
|||||||| |||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
7746810 |
cctgcttcggttgtgaaatgaaagctcatttactccaatacctctttcttttcatgaatgcctgtaattttcagat |
7746735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 4032520 - 4032471
Alignment:
| Q |
14 |
agaacagatgtaattacaacagcatcttctgtcttcacagacaagttttc |
63 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4032520 |
agaacagaagtaataacagcagcatcttctgtcttcacagacaagttttc |
4032471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 6233754 - 6233717
Alignment:
| Q |
227 |
atcaataatgtgaacccccttttcacattccattgatt |
264 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
6233754 |
atcaataatttgaaccaccttttcacattccattgatt |
6233717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 6914270 - 6914214
Alignment:
| Q |
140 |
aatgaaagctcatttggttcaatacatctttcttttcatgaattcctgtaattttca |
196 |
Q |
| |
|
|||||| |||||| |||| || ||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
6914270 |
aatgaaggctcatctggtccagtacctctttcttttaatgaatttctgtaattttca |
6914214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University