View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16126_low_7 (Length: 252)
Name: NF16126_low_7
Description: NF16126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16126_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 42677261 - 42677019
Alignment:
| Q |
1 |
caatctcttgatggttccaaattgtccaaaataagcttccgccatctccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagta |
100 |
Q |
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| T |
42677261 |
caatctcttgatggttccaaattgtccaaaataagctttcgccatctccatctcttagaagccatgtggaatcaaaccaatatacaaaacatgggaagta |
42677162 |
T |
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| Q |
101 |
ttctccaatggtttgcggctaggaccagcttccaacgacaaaaaatcagcaccatgctcaaatggaaaaaattaaatggcaatggctttataccacacga |
200 |
Q |
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| T |
42677161 |
ttctccaatggtttgcgactaggaccagcttccaacgacaaaaaatcagcaccatgctcaaatggatagaattaaatggcaatggctttataccacacga |
42677062 |
T |
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| Q |
201 |
aagagatctgattacactaaaacatattcgctttgatattctt |
243 |
Q |
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| T |
42677061 |
aagagatctgattacactaaaacatattcgctttgattttctt |
42677019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48969545 - 48969581
Alignment:
| Q |
1 |
caatctcttgatggttccaaattgtccaaaataagct |
37 |
Q |
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| T |
48969545 |
caatctcttgatggttccaaattgtccaaaataagct |
48969581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 48969712 - 48969784
Alignment:
| Q |
42 |
ccatctccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagtattctccaatggttt |
114 |
Q |
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| T |
48969712 |
ccatctccttctcatagaagccatgtggaatccgaccaatatacaaaacaggggaagaattctccaattgttt |
48969784 |
T |
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