View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16127_high_1 (Length: 606)
Name: NF16127_high_1
Description: NF16127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16127_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 24 - 597
Target Start/End: Complemental strand, 21078576 - 21077992
Alignment:
| Q |
24 |
gagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgatgctgcgctttttctttttatgggaacttggagg |
123 |
Q |
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| T |
21078576 |
gagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgatgctgcgttttttctttttatgggaacttggagg |
21078477 |
T |
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| Q |
124 |
aaaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacatatcactctgttgctccaagaaggagacagggaag |
223 |
Q |
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| T |
21078476 |
caaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacatatcactctgttgctccaagaaggagacagggaag |
21078377 |
T |
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| Q |
224 |
aaggatgtggttggagactcaatacccttttcgcggtgcgatctcatgttggaaggaaaaaccttatcatggtcaagaaaagcatgcttctgcttcctat |
323 |
Q |
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| T |
21078376 |
aaggatgtggtcggagactcaatacccttttcgcagtgcgatctcatgttggacggaaaaaccttatcatagtcaagaaatgcatgcttctgcttcctat |
21078277 |
T |
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| Q |
324 |
gatcatcaagaacatcatgtttatgtttcttggtcagaggttgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccaccgagtgcagtgcc |
423 |
Q |
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| T |
21078276 |
gatcatcaagaacatcatgtttctgtttcttggtcagaggttgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccgccgagtgcagtgcc |
21078177 |
T |
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| Q |
424 |
ggaggtgaagattctgtggcacaaatcacatttgaacattgttgatattaaacaaccaatattctttttctgctcatc------------gtgatcatat |
511 |
Q |
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| T |
21078176 |
ggaggtgaagattctgtggcacaaatcacatttgaacattgttgatattgaacaaccaatattctttttctgatcatcagtagcatcatggtgatcatat |
21078077 |
T |
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| Q |
512 |
tctttcttttgttgttgttgtttatggttgtcgtaacaagaacgatgagaaaaatgtttcttcatgatcgtgatgattgatgatgt |
597 |
Q |
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| T |
21078076 |
tctttcttttgatgttgttgtttatggttgtcgtaacaagaacgaagagaaaaatgtttcttcatgatcgtgatga-tgatgatgt |
21077992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 3073724 - 3073780
Alignment:
| Q |
25 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
81 |
Q |
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| T |
3073724 |
agacatatcgaagagtgtatatgctccattaagatgttcatgatcaatgatatttct |
3073780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 27732088 - 27732144
Alignment:
| Q |
25 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
81 |
Q |
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|||||||| |||||| | |||||| |||||||| ||||||||||||| |||||||| |
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| T |
27732088 |
agacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatatttct |
27732144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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