View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16127_high_2 (Length: 358)
Name: NF16127_high_2
Description: NF16127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16127_high_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 1425541 - 1425887
Alignment:
| Q |
12 |
gaatagaccatgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgt |
111 |
Q |
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| T |
1425541 |
gaatagaccatgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgt |
1425640 |
T |
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| Q |
112 |
tgcatgatatctagttatgtagtgtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatgtgtattatcatcattatgtaact |
211 |
Q |
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| T |
1425641 |
tgcatgatatctagttatgtaatgtgagataatgaattcaatgaataagtcttttgtaagtatgaatatcaccaatgtgtattatcatcattatgtaact |
1425740 |
T |
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| Q |
212 |
tgatagaagtattagaaggtttagatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatg |
311 |
Q |
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| T |
1425741 |
tgatggaagtattagaaggtttagatgtaggttaagatccaagtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatg |
1425840 |
T |
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| Q |
312 |
ttagctctaattctatcccgtctaatcttactataaatcgaacacaa |
358 |
Q |
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| T |
1425841 |
ttagctctaattctattccgtctaatcttactatacatccaacacaa |
1425887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 28 - 358
Target Start/End: Original strand, 1447637 - 1447977
Alignment:
| Q |
28 |
agccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgtt-------gca--tga |
118 |
Q |
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| T |
1447637 |
agccaatgcttaaggtatttgaaaactctacaagcagtactacaatgaatatttgtgggtttggataagaattagctaagttgttaactgatgaaggtga |
1447736 |
T |
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| Q |
119 |
tatctagttatgtagtgtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgata |
216 |
Q |
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| T |
1447737 |
tatctagttatgtaatgtgagatactgaattcaatgaatgagtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatgtaacttgata |
1447836 |
T |
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| Q |
217 |
gaagtattagaaggtttagatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagc |
316 |
Q |
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| T |
1447837 |
gaagtattagaaggtttagatgtaggttaagatccaagtaatcttcagtcaccaagtaaacctaagtagtattgtcccataaatttatgttca-gttagc |
1447935 |
T |
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| Q |
317 |
tctaattctatcccgtctaatcttactataaatcgaacacaa |
358 |
Q |
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| T |
1447936 |
tctaattttatcccctctagtcttactacacatccaacacaa |
1447977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 136 - 328
Target Start/End: Original strand, 1470229 - 1470423
Alignment:
| Q |
136 |
tgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgatagaagtattagaaggttt |
233 |
Q |
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|||||| || ||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||| | |
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| T |
1470229 |
tgagataatgaattcaatgaaggggtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatataacttgatggaagtattataaggtct |
1470328 |
T |
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| Q |
234 |
agatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctctaattctatc |
328 |
Q |
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| T |
1470329 |
tgatttaggtttagatccaagtaatcttcagtcatcaagtaaacctaagtagtattgccccataaatttatgttcatgttaggtctaattctatc |
1470423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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