View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16127_low_4 (Length: 235)
Name: NF16127_low_4
Description: NF16127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16127_low_4 |
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| [»] scaffold0572 (1 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0572 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 6603 - 6371
Alignment:
| Q |
3 |
aatggataaatttgactggtatgaactttacatttctataagaattgtatatattataagttgtgttttattgtgcccttatgttagttgttgctttaac |
102 |
Q |
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| T |
6603 |
aatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgcgcccttatgttagttgttgctttaac |
6504 |
T |
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| Q |
103 |
agggtcctgtttgttcttttatcaattttcttagttagtttaaatgaacaaatggaaattatgggttctttgtttatatttatattcgtcagcttagaat |
202 |
Q |
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| T |
6503 |
agggtcctgtttgttcttttatcaattttcttagttagtttaaattaacaaatggaaattctgggttctttgtttatatttatattcgtcagcttagaat |
6404 |
T |
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| Q |
203 |
atgcatttgttttggtcggttaatgtgacatct |
235 |
Q |
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| T |
6403 |
atgcatttgttttggccggttaatgtgacatct |
6371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 30989 - 31221
Alignment:
| Q |
3 |
aatggataaatttgactggtatgaactttacatttctataagaattgtatatattataagttgtgttttattgtgcccttatgttagttgttgctttaac |
102 |
Q |
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| T |
30989 |
aatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgcgcccttatgttagttgttgctttaac |
31088 |
T |
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| Q |
103 |
agggtcctgtttgttcttttatcaattttcttagttagtttaaatgaacaaatggaaattatgggttctttgtttatatttatattcgtcagcttagaat |
202 |
Q |
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| T |
31089 |
agggtcctgtttgttcttttatcaattttcttagttagtttaaattaacaaatggaaattctgggttctttgtttatatttatattcgtcagcttagaat |
31188 |
T |
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| Q |
203 |
atgcatttgttttggtcggttaatgtgacatct |
235 |
Q |
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| T |
31189 |
atgcatttgttttggccggttaatgtgacatct |
31221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 20970753 - 20970521
Alignment:
| Q |
3 |
aatggataaatttgactggtatgaactttacatttctataagaattgtatatattataagttgtgttttattgtgcccttatgttagttgttgctttaac |
102 |
Q |
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| T |
20970753 |
aatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgtgcccttatgttagttgttgctttaac |
20970654 |
T |
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| Q |
103 |
agggtcctgtttgttcttttatcaattttcttagttagtttaaatgaacaaatggaaattatgggttctttgtttatatttatattcgtcagcttagaat |
202 |
Q |
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| T |
20970653 |
agggtcctgtttgttcttttatcaattttctttgttagtttaaattaacaaatggaaattctgggttctttgtttatatttatattcgtcagcttagaat |
20970554 |
T |
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| Q |
203 |
atgcatttgttttggtcggttaatgtgacatct |
235 |
Q |
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| T |
20970553 |
atgcatttgttttggccggttaatgtgacatct |
20970521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 15683872 - 15683909
Alignment:
| Q |
19 |
tggtatgaactttacatttctataagaattgtatatat |
56 |
Q |
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| T |
15683872 |
tggtatgaactttacatttctataagaattgtatatat |
15683909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 41403346 - 41403114
Alignment:
| Q |
3 |
aatggataaatttgactggtatgaactttacatttctataagaattgtatatattataagttgtgttttattgtgcccttatgttagttgttgctttaac |
102 |
Q |
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| T |
41403346 |
aatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgcgcccttatgttagttgttgctttaac |
41403247 |
T |
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| Q |
103 |
agggtcctgtttgttcttttatcaattttcttagttagtttaaatgaacaaatggaaattatgggttctttgtttatatttatattcgtcagcttagaat |
202 |
Q |
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| T |
41403246 |
agggtcctgtttgttcttttatcaattttcttagttagtttaaattaacaaatggaaattctgggttctttgtttatatttatattcgtcagcttagaat |
41403147 |
T |
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| Q |
203 |
atgcatttgttttggtcggttaatgtgacatct |
235 |
Q |
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| T |
41403146 |
atgcatttgttttggccggttaatgtgacatct |
41403114 |
T |
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