View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16127_low_5 (Length: 208)
Name: NF16127_low_5
Description: NF16127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16127_low_5 |
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| [»] scaffold0572 (1 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 20971052 - 20971234
Alignment:
| Q |
10 |
aggagcacagatatgtaaacaagtgatgccaacaaacaattaacaaattggcaaaaaattcacgaagaaattgaaaatattccagtatttccttcaccag |
109 |
Q |
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|||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
20971052 |
aggaacacaaatatgtaaacaagtgatgccaacaaacaataaacagattggcaaaaaattcacgaagaaattgaaaatatttcagtatctccttcaccat |
20971151 |
T |
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| Q |
110 |
atccttcagattactttctttatagatgatactatcaaaataaagaactgaacaggtgcaagtgcaatgacataagatgtaag |
192 |
Q |
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| T |
20971152 |
atccttcagattactttctttatagatgatactatcaaaataaagaactgaacaggtgcaagtgcaatgacataagatgtaag |
20971234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 20981545 - 20981664
Alignment:
| Q |
51 |
aacaaattggcaaaaaattcacgaagaaattgaaaatattccagtatttccttcaccagatccttcagattactttctttatagatgatactatcaaaat |
150 |
Q |
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|||| ||||||||| |||||| ||||||||||||||| | ||||||||||||||||| ||||||||| || |||| ||||||||||||| | ||||||| |
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| T |
20981545 |
aacacattggcaaagaattcatgaagaaattgaaaatcattcagtatttccttcaccacatccttcagttttctttatttatagatgatattttcaaaat |
20981644 |
T |
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| Q |
151 |
aaagaactgaacaggtgcaa |
170 |
Q |
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|||||| |||||| |||||| |
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| T |
20981645 |
aaagaagtgaacaagtgcaa |
20981664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 34 - 168
Target Start/End: Complemental strand, 32598182 - 32598048
Alignment:
| Q |
34 |
gatgccaacaaacaattaacaaattggcaaaaaattcacgaagaaattgaaaatattccagtatttccttcaccagatccttcagattactttctttata |
133 |
Q |
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|||||||| ||| || |||| ||||||||| || ||| |||||||||||||| || || |||||||||||||| | |||||||||| |||| |||||| |
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| T |
32598182 |
gatgccaataaataacaaacacattggcaaagaaatcattaagaaattgaaaatctttcaatatttccttcaccacaaccttcagatttctttatttata |
32598083 |
T |
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| Q |
134 |
gatgatactatcaaaataaagaactgaacaggtgc |
168 |
Q |
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| T |
32598082 |
gatgatactttcaaaataaagaacgtaacaggtgc |
32598048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 6902 - 7088
Alignment:
| Q |
10 |
aggagcacagatatgtaaacaagtgatgccaacaaacaattaacaaattggcaaaaaattcacgaagaaattgaaaatattccagtatttccttcacc-- |
107 |
Q |
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|||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6902 |
aggaacacaaatatgtaaacaagtgatgccaacaaacaataaacagattggcaaaaaattcacgaagaaattgaaaatattccagtatttccttcaccat |
7001 |
T |
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| Q |
108 |
--agatccttcagattactttctttatagatgatactatcaaaataaagaactgaacaggtgcaagtgcaatgacataagatgtaag |
192 |
Q |
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| T |
7002 |
atatatccttcagattactttctttatagatgatactatcaaaataaagaactgaacaggtgcaagtgcaatgacatgagatgtaag |
7088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 30690 - 30504
Alignment:
| Q |
10 |
aggagcacagatatgtaaacaagtgatgccaacaaacaattaacaaattggcaaaaaattcacgaagaaattgaaaatattccagtatttccttcacc-- |
107 |
Q |
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|||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30690 |
aggaacacaaatatgtaaacaagtgatgccaacaaacaataaacagattggcaaaaaattcacgaagaaattgaaaatattccagtatttccttcaccat |
30591 |
T |
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| Q |
108 |
--agatccttcagattactttctttatagatgatactatcaaaataaagaactgaacaggtgcaagtgcaatgacataagatgtaag |
192 |
Q |
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| T |
30590 |
atatatccttcagattactttctttatagatgatactatcaaaataaagaactgaacaggtgcaagtgcaatgacatgagatgtaag |
30504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 41403645 - 41403831
Alignment:
| Q |
10 |
aggagcacagatatgtaaacaagtgatgccaacaaacaattaacaaattggcaaaaaattcacgaagaaattgaaaatattccagtatttccttcacc-- |
107 |
Q |
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|||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41403645 |
aggaacacaaatatgtaaacaagtgatgccaacaaacaataaacagattggcaaaaaattcacgaagaaattgaaaatattccagtatttccttcaccat |
41403744 |
T |
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| Q |
108 |
--agatccttcagattactttctttatagatgatactatcaaaataaagaactgaacaggtgcaagtgcaatgacataagatgtaag |
192 |
Q |
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| T |
41403745 |
atatatccttcagattactttctttatagatgatactatcaaaataaagaactgaacaggtgcaagtgcaatgacatgagatgtaag |
41403831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 81724 - 81775
Alignment:
| Q |
112 |
ccttcagattactttctttatagatgatactatcaaaataaagaactgaaca |
163 |
Q |
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| T |
81724 |
ccttcagatttctttatttatagatgatactctcgtaataaagaactgaaca |
81775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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