View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16128_high_1 (Length: 463)
Name: NF16128_high_1
Description: NF16128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16128_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 42942008 - 42941582
Alignment:
| Q |
19 |
agttggttatgtcatctagatgtcaattcaattgttaagagtttgattttgtaaccagatgaaattcaaaactcatatgtagcagctgtaaatgacatga |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42942008 |
agttggttatgtcatcgagatgtcaattcaattgttaagagtttgattttgtaaccggatgaaattcaaaactcatatgtagcagttgtaaatgacatga |
42941909 |
T |
|
| Q |
119 |
cgattaatgtcattgttgttaataataagttgacctaaaatcaacctaaaatgaataggatcaattaaggtagccaatgcctaatgctgcttgctattat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
42941908 |
cgattaatgtcattgttgttaataataagttgacctaaaatcaacttaaaatgaataggatcaattaaggtagccagtgcctaatgctgcttgctact-- |
42941811 |
T |
|
| Q |
219 |
tttacctcagcagttggagagtttgctgggaaatgatatgtgatgactgaatgtttcttgaagtacttagactggaaaaattcaattactttttccaaag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42941810 |
-ttacctcagcagttggagagtttgctgggaaatgatatgtgatgactgaatgtttcttgaagtacttagactggaaaaattcaattactttttccaaag |
42941712 |
T |
|
| Q |
319 |
cttcttcttcttcatcctcatatttgtcatcggctgccaaacggtccctaacagcagtctcaatctgaacaccatactgtgcacccttaatctctttaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42941711 |
cttcttcttcttcatcctcatatttgtcatcggctgccaaacggtccctaacagcagtctcaatctgaacaccatactgtgcacccttaatctctttaat |
42941612 |
T |
|
| Q |
419 |
cacaacaagtctaattgccttctccacagg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42941611 |
cacaacaagtctaattgccttctccacagg |
42941582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University