View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16128_high_3 (Length: 336)
Name: NF16128_high_3
Description: NF16128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16128_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 33767791 - 33768126
Alignment:
| Q |
1 |
atgacaaatttaaccggatgtggcaaccatttaaggaccaaaatccagttgtggcaagccagtcaaatataacatcttcagacttctggaaccttcctcc |
100 |
Q |
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| T |
33767791 |
atgacaaatttaaccggatgtggcaaccatttaaggaccaaaatccagttgtggcaagccagtcaaatataacatcttcagacttctggaaccttcctcc |
33767890 |
T |
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| Q |
101 |
agttaaagcattcagttcaggaataaccactagcaaaggaaaagcacttgaaattcagtggccaccattgtcccttccaagtacttactactacatttcc |
200 |
Q |
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| T |
33767891 |
agttaaagcattcagttcaggaataaccactagcaaaggaaaagcacttgaaattcagtggccaccattgtaccttccaagtacttactactacatttcc |
33767990 |
T |
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| Q |
201 |
ctctattttcaagacaacagacatccaagcccttttagctggagaacctttgatgtttctattaatggccacaccttttattctaaccttaatgccacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33767991 |
ctctattttcaagacaacagacatccaagcccttttagctggagaacctttgatgtttctattaatggccacaccttttattctaaccttaatgccacat |
33768090 |
T |
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| Q |
301 |
ctaagggcgtcacagtttatgctgcacagtggccac |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33768091 |
ctaagggcgtcacagtttatgctgcacagtggccac |
33768126 |
T |
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