View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16128_low_2 (Length: 387)
Name: NF16128_low_2
Description: NF16128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16128_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 5801744 - 5802099
Alignment:
| Q |
1 |
ttatttacaacttaacctaaaaataacattcttaacatcatagtcttgaaaggtatgattacagctccattgtatatcaaattttacagtactgcagtaa |
100 |
Q |
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| T |
5801744 |
ttatttacaacttaacctaaaaataacattcttaacatcatagtcttaaaaggtatgattacagctccattgtatatcaaattttacagtactg------ |
5801837 |
T |
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| Q |
101 |
cattctaagttactaacatctacactgacttgtttcattatcattagtacagacaaccaataaataaggtaccactannnnnnntgaatcattgcaagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
5801838 |
-----taagttactaacatctacactgacttgtttcattaa----agtacagacaaccaataaataaggtaccaccaccccccctgaatcattgcaagtt |
5801928 |
T |
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| Q |
201 |
attaattatacagataataagcattagtatgctcaataagaatagggcaaaaatattgattaaattctttagcaataattatagtcctacttcttgattt |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5801929 |
attagttatacagataataagcattagtatgctcaataagaatagggcaaaaatattgattaaattctttagcaataattatagtcctacttcttgattt |
5802028 |
T |
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| Q |
301 |
tgaggaataatgttgactgctgaactttgcgtggtagctactatttgtggctgctcaactctccgtggtggt |
372 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5802029 |
tgaggaataatgttgac-actgaactttgcgtggtagctactatttgtggctgctcaactctccgtggtggt |
5802099 |
T |
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